Protein–RNA interactions for Protein: Q6PR54

Rif1, Telomere-associated protein RIF1, mousemouse

Known RBP Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rif1Q6PR54 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Rif1Q6PR54 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Gm29649-201ENSMUST00000185649 419 ntBASIC12.47□□□□□ -0.41
Rif1Q6PR54 Gm42627-201ENSMUST00000197347 224 ntBASIC12.47□□□□□ -0.41
Rif1Q6PR54 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Gm37811-201ENSMUST00000192416 2601 ntBASIC12.47□□□□□ -0.41
Rif1Q6PR54 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Rif1Q6PR54 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Gm43118-201ENSMUST00000199149 775 ntBASIC12.47□□□□□ -0.41
Rif1Q6PR54 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 AC107711.5-202ENSMUST00000226429 702 ntBASIC12.47□□□□□ -0.41
Rif1Q6PR54 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Mir433-201ENSMUST00000093564 124 ntBASIC12.47□□□□□ -0.41
Rif1Q6PR54 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Rif1Q6PR54 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC12.46□□□□□ -0.41
Rif1Q6PR54 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Gm36858-201ENSMUST00000194501 2391 ntBASIC12.46□□□□□ -0.41
Rif1Q6PR54 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC12.46□□□□□ -0.41
Rif1Q6PR54 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Gm7558-201ENSMUST00000193221 1165 ntBASIC12.46□□□□□ -0.41
Rif1Q6PR54 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Klk2-ps-201ENSMUST00000205342 571 ntBASIC12.46□□□□□ -0.41
Rif1Q6PR54 Gm45865-201ENSMUST00000211815 945 ntBASIC12.46□□□□□ -0.41
Rif1Q6PR54 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Rif1Q6PR54 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Rif1Q6PR54 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Rif1Q6PR54 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Rif1Q6PR54 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Rif1Q6PR54 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Rif1Q6PR54 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Rif1Q6PR54 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Rif1Q6PR54 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC12.46□□□□□ -0.42
Rif1Q6PR54 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC12.46□□□□□ -0.42
Rif1Q6PR54 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Rif1Q6PR54 Gm13342-201ENSMUST00000121055 207 ntBASIC12.46□□□□□ -0.42
Rif1Q6PR54 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.42
Rif1Q6PR54 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Rif1Q6PR54 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Rif1Q6PR54 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Rif1Q6PR54 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Rif1Q6PR54 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Rif1Q6PR54 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Rif1Q6PR54 Zscan30-202ENSMUST00000224144 1458 ntBASIC12.45□□□□□ -0.42
Rif1Q6PR54 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Rif1Q6PR54 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Rif1Q6PR54 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Rif1Q6PR54 Gm9816-201ENSMUST00000122292 1414 ntBASIC12.45□□□□□ -0.42
Rif1Q6PR54 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Rif1Q6PR54 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms