Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Gm15653-201ENSMUST00000119247 907 ntBASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Mir1897-201ENSMUST00000122581 272 ntBASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 AC238811.1-201ENSMUST00000225302 441 ntBASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3aQ3ULJ3 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Gm9867-201ENSMUST00000192212 2647 ntBASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Gm29667-201ENSMUST00000190817 490 ntBASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Gm16476-201ENSMUST00000221544 139 ntBASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC15.57■□□□□ 0.08
Upf3aQ3ULJ3 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Cd63-ps-201ENSMUST00000145417 875 ntBASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Gm4691-201ENSMUST00000182339 1000 ntBASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Gm2451-201ENSMUST00000199447 999 ntBASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Gm10290-201ENSMUST00000200451 999 ntBASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Upf3aQ3ULJ3 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Ptprs-211ENSMUST00000223859 5588 ntBASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Gm6263-201ENSMUST00000120029 1342 ntBASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Gm6473-201ENSMUST00000188572 1210 ntBASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Gm43703-201ENSMUST00000200523 763 ntBASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Dupd1-202ENSMUST00000224735 548 ntBASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3aQ3ULJ3 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms