Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Cdx1P18111 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Cdx1P18111 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC12.01□□□□□ -0.49
Cdx1P18111 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Gm43514-201ENSMUST00000198852 424 ntBASIC12.01□□□□□ -0.49
Cdx1P18111 Gm43347-201ENSMUST00000200226 580 ntBASIC12.01□□□□□ -0.49
Cdx1P18111 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Cdx1P18111 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC12.01□□□□□ -0.49
Cdx1P18111 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Cdx1P18111 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
Cdx1P18111 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC12.01□□□□□ -0.49
Cdx1P18111 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Cdx1P18111 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Cdx1P18111 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Cdx1P18111 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC12□□□□□ -0.49
Cdx1P18111 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Gm38094-201ENSMUST00000195864 2978 ntBASIC12□□□□□ -0.49
Cdx1P18111 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Cdx1P18111 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Cdx1P18111 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC12□□□□□ -0.49
Cdx1P18111 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Cdx1P18111 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC12□□□□□ -0.49
Cdx1P18111 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC12□□□□□ -0.49
Cdx1P18111 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC12□□□□□ -0.49
Cdx1P18111 Gm15372-201ENSMUST00000120729 834 ntBASIC12□□□□□ -0.49
Cdx1P18111 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC12□□□□□ -0.49
Cdx1P18111 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
Cdx1P18111 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Cdx1P18111 Gm6443-201ENSMUST00000203599 874 ntBASIC12□□□□□ -0.49
Cdx1P18111 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC12□□□□□ -0.49
Cdx1P18111 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Cdx1P18111 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Gm6190-201ENSMUST00000220683 1374 ntBASIC12□□□□□ -0.49
Cdx1P18111 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC12□□□□□ -0.49
Cdx1P18111 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
Cdx1P18111 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC12□□□□□ -0.49
Cdx1P18111 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Cdx1P18111 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms