Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Hoxd3P09027 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC11.57□□□□□ -0.56
Hoxd3P09027 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Hoxd3P09027 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC11.56□□□□□ -0.56
Hoxd3P09027 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC11.56□□□□□ -0.56
Hoxd3P09027 Gm13365-201ENSMUST00000121188 973 ntBASIC11.56□□□□□ -0.56
Hoxd3P09027 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Hoxd3P09027 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC11.56□□□□□ -0.56
Hoxd3P09027 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC11.56□□□□□ -0.56
Hoxd3P09027 Gm19331-201ENSMUST00000193799 1092 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Gm37812-201ENSMUST00000195216 2475 ntBASIC11.56□□□□□ -0.56
Hoxd3P09027 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC11.56□□□□□ -0.56
Hoxd3P09027 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC11.56□□□□□ -0.56
Hoxd3P09027 Gm5628-201ENSMUST00000222318 1049 ntBASIC11.56□□□□□ -0.56
Hoxd3P09027 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC11.56□□□□□ -0.56
Hoxd3P09027 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Gm8396-201ENSMUST00000057361 823 ntBASIC11.56□□□□□ -0.56
Hoxd3P09027 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Hoxd3P09027 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Hoxd3P09027 Ccdc166-201ENSMUST00000182172 2584 ntBASIC11.56□□□□□ -0.56
Hoxd3P09027 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Hoxd3P09027 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC11.56□□□□□ -0.56
Hoxd3P09027 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hoxd3P09027 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Hoxd3P09027 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC11.55□□□□□ -0.56
Hoxd3P09027 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC11.55□□□□□ -0.56
Hoxd3P09027 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC11.55□□□□□ -0.56
Hoxd3P09027 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Hoxd3P09027 Meig1-202ENSMUST00000115081 421 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Hoxd3P09027 Gm23958-201ENSMUST00000157207 105 ntBASIC11.55□□□□□ -0.56
Hoxd3P09027 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Hoxd3P09027 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Gm28745-201ENSMUST00000190069 305 ntBASIC11.55□□□□□ -0.56
Hoxd3P09027 Gm44335-201ENSMUST00000196879 141 ntBASIC11.55□□□□□ -0.56
Hoxd3P09027 Gm44297-201ENSMUST00000198304 141 ntBASIC11.55□□□□□ -0.56
Hoxd3P09027 Gm44346-201ENSMUST00000198851 141 ntBASIC11.55□□□□□ -0.56
Hoxd3P09027 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC11.55□□□□□ -0.56
Hoxd3P09027 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC11.55□□□□□ -0.56
Hoxd3P09027 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Hoxd3P09027 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Cd59a-201ENSMUST00000040423 1691 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC11.55□□□□□ -0.56
Hoxd3P09027 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hoxd3P09027 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Gm12017-201ENSMUST00000122453 1003 ntBASIC11.54□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms