Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prom1O54990 Hist1h2al-201ENSMUST00000091708 339 ntBASIC16.33■□□□□ 0.2
Prom1O54990 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Prom1O54990 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Prom1O54990 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prom1O54990 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prom1O54990 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Prom1O54990 Gm3365-201ENSMUST00000216296 1480 ntBASIC16.33■□□□□ 0.2
Prom1O54990 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prom1O54990 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
Prom1O54990 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prom1O54990 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prom1O54990 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prom1O54990 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prom1O54990 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prom1O54990 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Prom1O54990 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Gm4875-201ENSMUST00000118257 786 ntBASIC16.32■□□□□ 0.2
Prom1O54990 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC16.32■□□□□ 0.2
Prom1O54990 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC16.32■□□□□ 0.2
Prom1O54990 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC16.32■□□□□ 0.2
Prom1O54990 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Gm46209-201ENSMUST00000217912 553 ntBASIC16.32■□□□□ 0.2
Prom1O54990 Dupd1-202ENSMUST00000224735 548 ntBASIC16.32■□□□□ 0.2
Prom1O54990 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Gm10313-201ENSMUST00000095320 1002 ntBASIC16.32■□□□□ 0.2
Prom1O54990 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Prom1O54990 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prom1O54990 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Gm14928-201ENSMUST00000120198 477 ntBASIC16.31■□□□□ 0.2
Prom1O54990 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Prom1O54990 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC16.31■□□□□ 0.2
Prom1O54990 Gm45098-201ENSMUST00000207179 657 ntBASIC16.31■□□□□ 0.2
Prom1O54990 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.31■□□□□ 0.2
Prom1O54990 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC16.31■□□□□ 0.2
Prom1O54990 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Prom1O54990 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC16.31■□□□□ 0.2
Prom1O54990 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC16.31■□□□□ 0.2
Prom1O54990 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prom1O54990 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Prom1O54990 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC16.31■□□□□ 0.2
Prom1O54990 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Gm6912-201ENSMUST00000117218 544 ntBASIC16.3■□□□□ 0.2
Prom1O54990 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Prom1O54990 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC16.3■□□□□ 0.2
Prom1O54990 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Prom1O54990 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Mxra8os-201ENSMUST00000097740 687 ntBASIC16.3■□□□□ 0.2
Prom1O54990 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Prom1O54990 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prom1O54990 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC16.3■□□□□ 0.2
Prom1O54990 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms