Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC26.21■■□□□ 1.79
Limch1Q3UH68 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
Limch1Q3UH68 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Limch1Q3UH68 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC26.2■■□□□ 1.79
Limch1Q3UH68 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Limch1Q3UH68 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Limch1Q3UH68 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
Limch1Q3UH68 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Limch1Q3UH68 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
Limch1Q3UH68 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Limch1Q3UH68 Gm12818-201ENSMUST00000117562 1349 ntBASIC26.18■■□□□ 1.78
Limch1Q3UH68 Gm9812-201ENSMUST00000061934 968 ntBASIC26.18■■□□□ 1.78
Limch1Q3UH68 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Limch1Q3UH68 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Limch1Q3UH68 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
Limch1Q3UH68 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Limch1Q3UH68 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Limch1Q3UH68 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC26.17■■□□□ 1.78
Limch1Q3UH68 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC26.16■■□□□ 1.78
Limch1Q3UH68 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Limch1Q3UH68 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Limch1Q3UH68 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Limch1Q3UH68 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Limch1Q3UH68 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC26.15■■□□□ 1.78
Limch1Q3UH68 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC26.15■■□□□ 1.78
Limch1Q3UH68 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
Limch1Q3UH68 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Limch1Q3UH68 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC26.14■■□□□ 1.78
Limch1Q3UH68 Gm27502-201ENSMUST00000183495 199 ntBASIC26.14■■□□□ 1.78
Limch1Q3UH68 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC26.14■■□□□ 1.78
Limch1Q3UH68 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Limch1Q3UH68 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
Limch1Q3UH68 Gm7332-201ENSMUST00000118351 454 ntBASIC26.13■■□□□ 1.77
Limch1Q3UH68 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Limch1Q3UH68 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Limch1Q3UH68 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Limch1Q3UH68 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Limch1Q3UH68 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Limch1Q3UH68 H3f3aos-201ENSMUST00000097448 2905 ntBASIC26.11■■□□□ 1.77
Limch1Q3UH68 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Limch1Q3UH68 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Limch1Q3UH68 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
Limch1Q3UH68 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Limch1Q3UH68 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Limch1Q3UH68 AC122317.2-201ENSMUST00000218708 1248 ntBASIC26.11■■□□□ 1.77
Limch1Q3UH68 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Limch1Q3UH68 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC26.1■■□□□ 1.77
Limch1Q3UH68 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC26.1■■□□□ 1.77
Limch1Q3UH68 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
Limch1Q3UH68 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Limch1Q3UH68 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Limch1Q3UH68 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Limch1Q3UH68 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC26.09■■□□□ 1.77
Limch1Q3UH68 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Limch1Q3UH68 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Limch1Q3UH68 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Limch1Q3UH68 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Limch1Q3UH68 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC26.07■■□□□ 1.76
Limch1Q3UH68 AC153911.1-201ENSMUST00000220378 758 ntBASIC26.07■■□□□ 1.76
Limch1Q3UH68 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Limch1Q3UH68 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
Limch1Q3UH68 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Limch1Q3UH68 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
Limch1Q3UH68 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Limch1Q3UH68 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Limch1Q3UH68 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Limch1Q3UH68 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Limch1Q3UH68 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC26.05■■□□□ 1.76
Limch1Q3UH68 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC26.05■■□□□ 1.76
Limch1Q3UH68 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Limch1Q3UH68 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Limch1Q3UH68 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Limch1Q3UH68 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
Limch1Q3UH68 AC164433.2-201ENSMUST00000226346 1701 ntBASIC26.04■■□□□ 1.76
Limch1Q3UH68 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
Limch1Q3UH68 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Limch1Q3UH68 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Limch1Q3UH68 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC26.04■■□□□ 1.76
Limch1Q3UH68 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
Limch1Q3UH68 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Limch1Q3UH68 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC26.02■■□□□ 1.76
Limch1Q3UH68 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Limch1Q3UH68 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC26.02■■□□□ 1.76
Limch1Q3UH68 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
Limch1Q3UH68 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Limch1Q3UH68 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Limch1Q3UH68 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC26.02■■□□□ 1.76
Limch1Q3UH68 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Limch1Q3UH68 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Limch1Q3UH68 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
Limch1Q3UH68 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Limch1Q3UH68 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Limch1Q3UH68 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
Limch1Q3UH68 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC26■■□□□ 1.75
Limch1Q3UH68 Gm14523-201ENSMUST00000117260 558 ntBASIC26■■□□□ 1.75
Limch1Q3UH68 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC26■■□□□ 1.75
Limch1Q3UH68 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Limch1Q3UH68 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
Limch1Q3UH68 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
Limch1Q3UH68 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Retrieved 100 of 76,532 protein–RNA pairs in 102.2 ms