Protein–RNA interactions for Protein: P53668

Limk1, LIM domain kinase 1, mousemouse

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limk1P53668 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
Limk1P53668 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Limk1P53668 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.96■■□□□ 1.11
Limk1P53668 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Limk1P53668 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Limk1P53668 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Limk1P53668 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Limk1P53668 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Limk1P53668 Serp2-204ENSMUST00000228055 705 ntBASIC21.94■■□□□ 1.1
Limk1P53668 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Limk1P53668 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Limk1P53668 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Limk1P53668 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Limk1P53668 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Limk1P53668 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Limk1P53668 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Limk1P53668 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.92■■□□□ 1.1
Limk1P53668 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC21.92■■□□□ 1.1
Limk1P53668 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC21.92■■□□□ 1.1
Limk1P53668 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC21.92■■□□□ 1.1
Limk1P53668 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.92■■□□□ 1.1
Limk1P53668 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Limk1P53668 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Limk1P53668 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Limk1P53668 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Limk1P53668 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Limk1P53668 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Limk1P53668 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
Limk1P53668 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Limk1P53668 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC21.9■■□□□ 1.1
Limk1P53668 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Limk1P53668 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Limk1P53668 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Limk1P53668 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
Limk1P53668 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Limk1P53668 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Limk1P53668 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC21.88■■□□□ 1.09
Limk1P53668 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Limk1P53668 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Limk1P53668 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.87■■□□□ 1.09
Limk1P53668 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.87■■□□□ 1.09
Limk1P53668 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Limk1P53668 Etf1-202ENSMUST00000180351 108 ntBASIC21.87■■□□□ 1.09
Limk1P53668 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Limk1P53668 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC21.87■■□□□ 1.09
Limk1P53668 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC21.87■■□□□ 1.09
Limk1P53668 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Limk1P53668 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Limk1P53668 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Limk1P53668 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Limk1P53668 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Limk1P53668 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
Limk1P53668 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Limk1P53668 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Limk1P53668 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Limk1P53668 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Limk1P53668 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC21.84■■□□□ 1.09
Limk1P53668 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Limk1P53668 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.83■■□□□ 1.09
Limk1P53668 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Limk1P53668 AC117769.4-201ENSMUST00000225679 685 ntBASIC21.83■■□□□ 1.09
Limk1P53668 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Limk1P53668 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
Limk1P53668 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Limk1P53668 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC21.82■■□□□ 1.08
Limk1P53668 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC21.82■■□□□ 1.08
Limk1P53668 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Limk1P53668 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Limk1P53668 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.81■■□□□ 1.08
Limk1P53668 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Limk1P53668 Gm10232-201ENSMUST00000089221 720 ntBASIC21.81■■□□□ 1.08
Limk1P53668 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Limk1P53668 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.8■■□□□ 1.08
Limk1P53668 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Limk1P53668 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Limk1P53668 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Limk1P53668 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Limk1P53668 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Limk1P53668 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Limk1P53668 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Limk1P53668 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Limk1P53668 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Limk1P53668 Gm5297-201ENSMUST00000198555 1171 ntBASIC21.78■■□□□ 1.08
Limk1P53668 Gm13241-201ENSMUST00000094493 780 ntBASIC21.78■■□□□ 1.08
Limk1P53668 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Limk1P53668 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Limk1P53668 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Limk1P53668 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Limk1P53668 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC21.76■■□□□ 1.07
Limk1P53668 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC21.76■■□□□ 1.07
Limk1P53668 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Limk1P53668 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Limk1P53668 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Limk1P53668 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
Limk1P53668 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC21.75■■□□□ 1.07
Limk1P53668 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Limk1P53668 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Limk1P53668 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Limk1P53668 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Limk1P53668 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.74■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms