Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Smc1aQ9CU62 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Gm8784-201ENSMUST00000222096 1435 ntBASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Gm2308-201ENSMUST00000166539 1004 ntBASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Smc1aQ9CU62 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 H2af-ps-201ENSMUST00000119066 295 ntBASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Gm37153-201ENSMUST00000193637 231 ntBASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Smc1aQ9CU62 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Gm10605-202ENSMUST00000183019 3198 ntBASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms