Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Ushbp1Q8R370 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Gm17968-201ENSMUST00000194902 784 ntBASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 AC154572.2-201ENSMUST00000225105 997 ntBASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ushbp1Q8R370 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 AC164567.1-201ENSMUST00000219185 960 ntBASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 AC130669.1-201ENSMUST00000228537 1672 ntBASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ushbp1Q8R370 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ushbp1Q8R370 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ushbp1Q8R370 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ushbp1Q8R370 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Gm21009-201ENSMUST00000197169 1669 ntBASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ushbp1Q8R370 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 81 ms