Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp40Q8BWR4 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp40Q8BWR4 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Usp40Q8BWR4 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Usp40Q8BWR4 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC20.33■□□□□ 0.85
Usp40Q8BWR4 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC20.33■□□□□ 0.85
Usp40Q8BWR4 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Usp40Q8BWR4 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Usp40Q8BWR4 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC20.33■□□□□ 0.85
Usp40Q8BWR4 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Usp40Q8BWR4 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Usp40Q8BWR4 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Usp40Q8BWR4 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Usp40Q8BWR4 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Usp40Q8BWR4 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Usp40Q8BWR4 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Usp40Q8BWR4 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.84
Usp40Q8BWR4 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp40Q8BWR4 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp40Q8BWR4 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp40Q8BWR4 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC20.33■□□□□ 0.84
Usp40Q8BWR4 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp40Q8BWR4 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Mir1897-201ENSMUST00000122581 272 ntBASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Gm42918-201ENSMUST00000199249 1580 ntBASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp40Q8BWR4 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Gm23547-201ENSMUST00000158210 271 ntBASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Gm9726-201ENSMUST00000180321 678 ntBASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Gm27631-201ENSMUST00000184163 466 ntBASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 AC132863.2-201ENSMUST00000226643 799 ntBASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp40Q8BWR4 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC20.3■□□□□ 0.84
Usp40Q8BWR4 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Usp40Q8BWR4 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Gm16476-201ENSMUST00000221544 139 ntBASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Dupd1-202ENSMUST00000224735 548 ntBASIC20.29■□□□□ 0.84
Usp40Q8BWR4 AC149588.3-201ENSMUST00000227515 150 ntBASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms