Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Gm38391-201ENSMUST00000191720 4069 ntBASIC15.56■□□□□ 0.08
Ccdc40Q8BI79 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 BC037039-201ENSMUST00000192003 2205 ntBASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Gm11453-201ENSMUST00000117318 1007 ntBASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Mir8098-201ENSMUST00000184011 137 ntBASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ccdc40Q8BI79 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Gm7901-201ENSMUST00000120430 1597 ntBASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 AC164107.1-201ENSMUST00000227730 2161 ntBASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Gm11764-201ENSMUST00000120221 623 ntBASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Gm7862-201ENSMUST00000121461 292 ntBASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Ccdc40Q8BI79 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms