Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm27437-201ENSMUST00000183429 107 ntBASIC19.23■□□□□ 0.67
Trim28Q62318 Gm43703-201ENSMUST00000200523 763 ntBASIC19.23■□□□□ 0.67
Trim28Q62318 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC19.23■□□□□ 0.67
Trim28Q62318 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Trim28Q62318 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 AC124751.1-201ENSMUST00000222716 1408 ntBASIC19.23■□□□□ 0.67
Trim28Q62318 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC19.23■□□□□ 0.67
Trim28Q62318 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC19.23■□□□□ 0.67
Trim28Q62318 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trim28Q62318 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trim28Q62318 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Gm14719-201ENSMUST00000121891 340 ntBASIC19.22■□□□□ 0.67
Trim28Q62318 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
Trim28Q62318 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC19.22■□□□□ 0.67
Trim28Q62318 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim28Q62318 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
Trim28Q62318 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim28Q62318 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Trim28Q62318 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trim28Q62318 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Trim28Q62318 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
Trim28Q62318 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC19.21■□□□□ 0.67
Trim28Q62318 Mir1897-201ENSMUST00000122581 272 ntBASIC19.21■□□□□ 0.67
Trim28Q62318 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC19.21■□□□□ 0.67
Trim28Q62318 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim28Q62318 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Gm5626-201ENSMUST00000222151 1058 ntBASIC19.21■□□□□ 0.67
Trim28Q62318 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim28Q62318 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
Trim28Q62318 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim28Q62318 BC001981-202ENSMUST00000191393 1545 ntBASIC19.2■□□□□ 0.66
Trim28Q62318 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
Trim28Q62318 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC19.2■□□□□ 0.66
Trim28Q62318 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Gm15653-201ENSMUST00000119247 907 ntBASIC19.2■□□□□ 0.66
Trim28Q62318 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC19.2■□□□□ 0.66
Trim28Q62318 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Trim28Q62318 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Trim28Q62318 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
Trim28Q62318 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Gm5320-201ENSMUST00000207163 1519 ntBASIC19.2■□□□□ 0.66
Trim28Q62318 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim28Q62318 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Trim28Q62318 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Trim28Q62318 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC19.19■□□□□ 0.66
Trim28Q62318 AC132863.2-201ENSMUST00000226643 799 ntBASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms