Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC12.69□□□□□ -0.38
Col8a1Q00780 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
Col8a1Q00780 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Mir1938-201ENSMUST00000158746 100 ntBASIC12.69□□□□□ -0.38
Col8a1Q00780 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Gm8116-201ENSMUST00000182917 1201 ntBASIC12.69□□□□□ -0.38
Col8a1Q00780 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Col8a1Q00780 Gm38319-201ENSMUST00000194537 1266 ntBASIC12.69□□□□□ -0.38
Col8a1Q00780 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC12.69□□□□□ -0.38
Col8a1Q00780 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Col8a1Q00780 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Col8a1Q00780 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Col8a1Q00780 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col8a1Q00780 Gm7901-201ENSMUST00000120430 1597 ntBASIC12.69□□□□□ -0.38
Col8a1Q00780 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Col8a1Q00780 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC12.68□□□□□ -0.38
Col8a1Q00780 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC12.68□□□□□ -0.38
Col8a1Q00780 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC12.68□□□□□ -0.38
Col8a1Q00780 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Gm13829-201ENSMUST00000119600 138 ntBASIC12.68□□□□□ -0.38
Col8a1Q00780 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Gm12091-201ENSMUST00000146791 830 ntBASIC12.68□□□□□ -0.38
Col8a1Q00780 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Gm27533-201ENSMUST00000183800 152 ntBASIC12.68□□□□□ -0.38
Col8a1Q00780 Gm28631-201ENSMUST00000190740 334 ntBASIC12.68□□□□□ -0.38
Col8a1Q00780 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC12.68□□□□□ -0.38
Col8a1Q00780 Gm8515-201ENSMUST00000194852 576 ntBASIC12.68□□□□□ -0.38
Col8a1Q00780 Gm43630-201ENSMUST00000201550 776 ntBASIC12.68□□□□□ -0.38
Col8a1Q00780 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC12.68□□□□□ -0.38
Col8a1Q00780 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
Col8a1Q00780 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col8a1Q00780 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC12.67□□□□□ -0.38
Col8a1Q00780 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
Col8a1Q00780 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Col8a1Q00780 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC12.67□□□□□ -0.38
Col8a1Q00780 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Col8a1Q00780 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC12.67□□□□□ -0.38
Col8a1Q00780 Gm29667-201ENSMUST00000190817 490 ntBASIC12.67□□□□□ -0.38
Col8a1Q00780 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 AC155729.1-201ENSMUST00000227758 544 ntBASIC12.67□□□□□ -0.38
Col8a1Q00780 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col8a1Q00780 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Col8a1Q00780 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Col8a1Q00780 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms