Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Rfx1P48377 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC17.81■□□□□ 0.44
Rfx1P48377 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Gm15358-201ENSMUST00000119249 520 ntBASIC17.81■□□□□ 0.44
Rfx1P48377 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Rfx1P48377 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx1P48377 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Rfx1P48377 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Rfx1P48377 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.8■□□□□ 0.44
Rfx1P48377 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC17.8■□□□□ 0.44
Rfx1P48377 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 Gm8655-201ENSMUST00000221159 852 ntBASIC17.8■□□□□ 0.44
Rfx1P48377 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC17.8■□□□□ 0.44
Rfx1P48377 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 Gm21009-201ENSMUST00000197169 1669 ntBASIC17.8■□□□□ 0.44
Rfx1P48377 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx1P48377 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Gm7901-201ENSMUST00000120430 1597 ntBASIC17.79■□□□□ 0.44
Rfx1P48377 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Rfx1P48377 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC17.79■□□□□ 0.44
Rfx1P48377 Gm12008-201ENSMUST00000117791 755 ntBASIC17.79■□□□□ 0.44
Rfx1P48377 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Rfx1P48377 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC17.79■□□□□ 0.44
Rfx1P48377 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Otx2os1-206ENSMUST00000228153 787 ntBASIC17.79■□□□□ 0.44
Rfx1P48377 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Rfx1P48377 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Rfx1P48377 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx1P48377 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC17.79■□□□□ 0.44
Rfx1P48377 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC17.78■□□□□ 0.44
Rfx1P48377 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Rfx1P48377 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Rfx1P48377 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
Rfx1P48377 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Rfx1P48377 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Rfx1P48377 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC17.78■□□□□ 0.44
Rfx1P48377 Gm10499-201ENSMUST00000174094 934 ntBASIC17.78■□□□□ 0.44
Rfx1P48377 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms