Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Col18a1P39061 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC19.42■□□□□ 0.7
Col18a1P39061 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Gm21009-201ENSMUST00000197169 1669 ntBASIC19.42■□□□□ 0.7
Col18a1P39061 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Col18a1P39061 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC19.42■□□□□ 0.7
Col18a1P39061 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC19.42■□□□□ 0.7
Col18a1P39061 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC19.42■□□□□ 0.7
Col18a1P39061 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC19.42■□□□□ 0.7
Col18a1P39061 Gm43133-201ENSMUST00000197472 463 ntBASIC19.42■□□□□ 0.7
Col18a1P39061 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC19.42■□□□□ 0.7
Col18a1P39061 Gm45412-201ENSMUST00000210217 2275 ntBASIC19.42■□□□□ 0.7
Col18a1P39061 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col18a1P39061 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Col18a1P39061 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC19.42■□□□□ 0.7
Col18a1P39061 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Col18a1P39061 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col18a1P39061 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Col18a1P39061 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col18a1P39061 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
Col18a1P39061 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col18a1P39061 Gm9252-201ENSMUST00000172364 1602 ntBASIC19.41■□□□□ 0.7
Col18a1P39061 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col18a1P39061 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col18a1P39061 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col18a1P39061 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Col18a1P39061 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Col18a1P39061 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC19.41■□□□□ 0.7
Col18a1P39061 Proscos-202ENSMUST00000178990 666 ntBASIC19.41■□□□□ 0.7
Col18a1P39061 Gm27501-201ENSMUST00000183599 107 ntBASIC19.41■□□□□ 0.7
Col18a1P39061 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Col18a1P39061 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
Col18a1P39061 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col18a1P39061 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC19.41■□□□□ 0.7
Col18a1P39061 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col18a1P39061 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col18a1P39061 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Col18a1P39061 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC19.4■□□□□ 0.7
Col18a1P39061 Gm15808-201ENSMUST00000119046 604 ntBASIC19.4■□□□□ 0.7
Col18a1P39061 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col18a1P39061 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC19.4■□□□□ 0.7
Col18a1P39061 Gm27331-201ENSMUST00000183705 60 ntBASIC19.4■□□□□ 0.7
Col18a1P39061 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col18a1P39061 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC19.4■□□□□ 0.7
Col18a1P39061 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col18a1P39061 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Col18a1P39061 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col18a1P39061 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Col18a1P39061 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col18a1P39061 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col18a1P39061 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Col18a1P39061 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Col18a1P39061 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Col18a1P39061 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC19.39■□□□□ 0.7
Col18a1P39061 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Col18a1P39061 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC19.39■□□□□ 0.7
Col18a1P39061 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Col18a1P39061 Gm18473-201ENSMUST00000220543 868 ntBASIC19.39■□□□□ 0.7
Col18a1P39061 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC19.39■□□□□ 0.7
Col18a1P39061 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col18a1P39061 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col18a1P39061 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col18a1P39061 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC19.39■□□□□ 0.69
Col18a1P39061 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC19.39■□□□□ 0.69
Col18a1P39061 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col18a1P39061 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col18a1P39061 Gm8810-201ENSMUST00000172895 754 ntBASIC19.39■□□□□ 0.69
Col18a1P39061 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Col18a1P39061 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Col18a1P39061 Gm38341-201ENSMUST00000195357 515 ntBASIC19.39■□□□□ 0.69
Col18a1P39061 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC19.39■□□□□ 0.69
Col18a1P39061 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col18a1P39061 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col18a1P39061 Gm19430-201ENSMUST00000193847 2137 ntBASIC19.39■□□□□ 0.69
Col18a1P39061 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC19.39■□□□□ 0.69
Col18a1P39061 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Col18a1P39061 Gm11793-201ENSMUST00000120433 981 ntBASIC19.38■□□□□ 0.69
Col18a1P39061 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms