Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC12.22□□□□□ -0.45
Sdc1P18828 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC12.22□□□□□ -0.45
Sdc1P18828 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC12.22□□□□□ -0.45
Sdc1P18828 Gm4217-201ENSMUST00000182243 1002 ntBASIC12.22□□□□□ -0.45
Sdc1P18828 Gm7370-201ENSMUST00000219471 767 ntBASIC12.22□□□□□ -0.45
Sdc1P18828 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC12.22□□□□□ -0.45
Sdc1P18828 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Sdc1P18828 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Sdc1P18828 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Sdc1P18828 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC12.22□□□□□ -0.45
Sdc1P18828 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Sdc1P18828 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC12.21□□□□□ -0.45
Sdc1P18828 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Sdc1P18828 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC12.21□□□□□ -0.45
Sdc1P18828 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC12.21□□□□□ -0.45
Sdc1P18828 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC12.21□□□□□ -0.45
Sdc1P18828 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC12.21□□□□□ -0.45
Sdc1P18828 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc1P18828 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc1P18828 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc1P18828 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Sdc1P18828 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc1P18828 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc1P18828 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc1P18828 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
Sdc1P18828 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc1P18828 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc1P18828 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc1P18828 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc1P18828 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Sdc1P18828 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Sdc1P18828 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Sdc1P18828 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Otx2os1-204ENSMUST00000227221 751 ntBASIC12.2□□□□□ -0.46
Sdc1P18828 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
Sdc1P18828 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC12.2□□□□□ -0.46
Sdc1P18828 Gm42928-201ENSMUST00000197338 3339 ntBASIC12.2□□□□□ -0.46
Sdc1P18828 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Sdc1P18828 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC12.2□□□□□ -0.46
Sdc1P18828 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Sdc1P18828 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc1P18828 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC12.19□□□□□ -0.46
Sdc1P18828 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms