Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Lire1P11260 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC14.13□□□□□ -0.15
Lire1P11260 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
Lire1P11260 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC14.13□□□□□ -0.15
Lire1P11260 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Lire1P11260 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC14.13□□□□□ -0.15
Lire1P11260 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC14.13□□□□□ -0.15
Lire1P11260 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Lire1P11260 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Lire1P11260 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
Lire1P11260 Gm45053-201ENSMUST00000206112 2499 ntBASIC14.12□□□□□ -0.15
Lire1P11260 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
Lire1P11260 Gm11594-201ENSMUST00000122313 162 ntBASIC14.12□□□□□ -0.15
Lire1P11260 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC14.12□□□□□ -0.15
Lire1P11260 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14.12□□□□□ -0.15
Lire1P11260 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC14.12□□□□□ -0.15
Lire1P11260 AV026068-213ENSMUST00000223675 1171 ntBASIC14.12□□□□□ -0.15
Lire1P11260 CT009713.7-201ENSMUST00000224689 571 ntBASIC14.12□□□□□ -0.15
Lire1P11260 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Lire1P11260 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Lire1P11260 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Lire1P11260 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Gm32996-201ENSMUST00000199828 1447 ntBASIC14.12□□□□□ -0.15
Lire1P11260 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC14.12□□□□□ -0.15
Lire1P11260 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lire1P11260 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Lire1P11260 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC14.11□□□□□ -0.15
Lire1P11260 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC14.11□□□□□ -0.15
Lire1P11260 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC14.11□□□□□ -0.15
Lire1P11260 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC14.11□□□□□ -0.15
Lire1P11260 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC14.11□□□□□ -0.15
Lire1P11260 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Lire1P11260 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC14.11□□□□□ -0.15
Lire1P11260 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Lire1P11260 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC14.11□□□□□ -0.15
Lire1P11260 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Lire1P11260 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lire1P11260 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Lire1P11260 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Gm27528-202ENSMUST00000222916 2012 ntBASIC14.1□□□□□ -0.15
Lire1P11260 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Lire1P11260 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC14.1□□□□□ -0.15
Lire1P11260 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Lire1P11260 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Lire1P11260 Gm13418-201ENSMUST00000119097 944 ntBASIC14.1□□□□□ -0.15
Lire1P11260 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms