Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Col1a1P11087 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC17.24■□□□□ 0.35
Col1a1P11087 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Gm4984-201ENSMUST00000115987 360 ntBASIC17.24■□□□□ 0.35
Col1a1P11087 Gm15393-201ENSMUST00000120499 219 ntBASIC17.24■□□□□ 0.35
Col1a1P11087 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
Col1a1P11087 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Gm38319-201ENSMUST00000194537 1266 ntBASIC17.24■□□□□ 0.35
Col1a1P11087 AC155252.1-201ENSMUST00000226462 1208 ntBASIC17.24■□□□□ 0.35
Col1a1P11087 AC123645.1-201ENSMUST00000228469 605 ntBASIC17.24■□□□□ 0.35
Col1a1P11087 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Col1a1P11087 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
Col1a1P11087 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.23■□□□□ 0.35
Col1a1P11087 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Col1a1P11087 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
Col1a1P11087 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col1a1P11087 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Col1a1P11087 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Col1a1P11087 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col1a1P11087 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col1a1P11087 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Col1a1P11087 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.23■□□□□ 0.35
Col1a1P11087 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col1a1P11087 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col1a1P11087 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Col1a1P11087 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC17.23■□□□□ 0.35
Col1a1P11087 Gm7558-201ENSMUST00000193221 1165 ntBASIC17.23■□□□□ 0.35
Col1a1P11087 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC17.23■□□□□ 0.35
Col1a1P11087 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC17.23■□□□□ 0.35
Col1a1P11087 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC17.23■□□□□ 0.35
Col1a1P11087 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col1a1P11087 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col1a1P11087 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Col1a1P11087 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col1a1P11087 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col1a1P11087 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col1a1P11087 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col1a1P11087 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Col1a1P11087 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col1a1P11087 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Col1a1P11087 Gm12341-201ENSMUST00000119724 503 ntBASIC17.22■□□□□ 0.35
Col1a1P11087 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Col1a1P11087 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC17.22■□□□□ 0.35
Col1a1P11087 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col1a1P11087 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col1a1P11087 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col1a1P11087 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col1a1P11087 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col1a1P11087 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col1a1P11087 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC17.21■□□□□ 0.35
Col1a1P11087 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col1a1P11087 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Col1a1P11087 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC17.21■□□□□ 0.35
Col1a1P11087 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Col1a1P11087 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col1a1P11087 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col1a1P11087 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.21■□□□□ 0.35
Col1a1P11087 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col1a1P11087 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC17.21■□□□□ 0.34
Col1a1P11087 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Col1a1P11087 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Col1a1P11087 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.21■□□□□ 0.34
Col1a1P11087 Gm15460-201ENSMUST00000118147 391 ntBASIC17.2■□□□□ 0.34
Col1a1P11087 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col1a1P11087 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col1a1P11087 Gm9726-201ENSMUST00000180321 678 ntBASIC17.2■□□□□ 0.34
Col1a1P11087 Gm28911-201ENSMUST00000188837 117 ntBASIC17.2■□□□□ 0.34
Col1a1P11087 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC17.2■□□□□ 0.34
Col1a1P11087 AC154846.1-201ENSMUST00000226278 862 ntBASIC17.2■□□□□ 0.34
Col1a1P11087 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col1a1P11087 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col1a1P11087 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col1a1P11087 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Col1a1P11087 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC17.19■□□□□ 0.34
Col1a1P11087 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC17.19■□□□□ 0.34
Col1a1P11087 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms