Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 AC154412.1-201ENSMUST00000226540 2786 ntBASIC11.59□□□□□ -0.55
Hoxd3P09027 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Hoxd3P09027 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Hoxd3P09027 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC11.59□□□□□ -0.55
Hoxd3P09027 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC11.59□□□□□ -0.55
Hoxd3P09027 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC11.59□□□□□ -0.55
Hoxd3P09027 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Gm14701-201ENSMUST00000117156 348 ntBASIC11.59□□□□□ -0.55
Hoxd3P09027 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC11.59□□□□□ -0.55
Hoxd3P09027 Gm11745-201ENSMUST00000121669 448 ntBASIC11.59□□□□□ -0.55
Hoxd3P09027 Rprl2-201ENSMUST00000157150 290 ntBASIC11.59□□□□□ -0.55
Hoxd3P09027 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Gm2594-201ENSMUST00000214774 742 ntBASIC11.59□□□□□ -0.55
Hoxd3P09027 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC11.59□□□□□ -0.55
Hoxd3P09027 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Hoxd3P09027 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hoxd3P09027 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.55
Hoxd3P09027 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Hoxd3P09027 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC11.58□□□□□ -0.56
Hoxd3P09027 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Hoxd3P09027 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC11.58□□□□□ -0.56
Hoxd3P09027 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Hoxd3P09027 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC11.58□□□□□ -0.56
Hoxd3P09027 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC11.58□□□□□ -0.56
Hoxd3P09027 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC11.58□□□□□ -0.56
Hoxd3P09027 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC11.58□□□□□ -0.56
Hoxd3P09027 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC11.58□□□□□ -0.56
Hoxd3P09027 AC142191.1-201ENSMUST00000219217 699 ntTSL 5 BASIC11.58□□□□□ -0.56
Hoxd3P09027 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Hoxd3P09027 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 AC126250.1-201ENSMUST00000228343 1768 ntBASIC11.58□□□□□ -0.56
Hoxd3P09027 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Hoxd3P09027 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC11.58□□□□□ -0.56
Hoxd3P09027 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hoxd3P09027 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Hoxd3P09027 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 AC238940.1-201ENSMUST00000225106 1858 ntBASIC11.57□□□□□ -0.56
Hoxd3P09027 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC11.57□□□□□ -0.56
Hoxd3P09027 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC11.57□□□□□ -0.56
Hoxd3P09027 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Gm13332-201ENSMUST00000120451 1398 ntBASIC11.57□□□□□ -0.56
Hoxd3P09027 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Hoxd3P09027 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Gm20553-201ENSMUST00000204205 844 ntBASIC11.57□□□□□ -0.56
Hoxd3P09027 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC11.57□□□□□ -0.56
Hoxd3P09027 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC11.57□□□□□ -0.56
Hoxd3P09027 CT025555.1-201ENSMUST00000225901 1217 ntBASIC11.57□□□□□ -0.56
Hoxd3P09027 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Prr9-201ENSMUST00000070284 1183 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Hoxd3P09027 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hoxd3P09027 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms