Protein–RNA interactions for Protein: O35235

Tnfsf11, Tumor necrosis factor ligand superfamily member 11, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf11O35235 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm8242-201ENSMUST00000193029 1420 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm4609-201ENSMUST00000106443 1002 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm5138-201ENSMUST00000113842 1002 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm15191-201ENSMUST00000117933 1000 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm12182-201ENSMUST00000118655 1008 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm13882-201ENSMUST00000120886 1002 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm10284-201ENSMUST00000145057 1005 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm10481-201ENSMUST00000179228 1002 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm2574-201ENSMUST00000181051 1002 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm3200-201ENSMUST00000181493 1002 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm8825-201ENSMUST00000182565 998 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm4518-201ENSMUST00000182638 718 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm8330-201ENSMUST00000182754 1008 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm4575-201ENSMUST00000182991 1002 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm8709-201ENSMUST00000183230 1012 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm10293-201ENSMUST00000076317 1002 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm6316-201ENSMUST00000082064 1020 ntBASIC11.63□□□□□ -0.55
Tnfsf11O35235 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Tnfsf11O35235 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Tnfsf11O35235 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Gm42471-201ENSMUST00000201457 1865 ntBASIC11.61□□□□□ -0.55
Tnfsf11O35235 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Tnfsf11O35235 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Tnfsf11O35235 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms