Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lima1Q9ERG0 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Gm7935-201ENSMUST00000100555 1278 ntBASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Gm4459-201ENSMUST00000118750 468 ntBASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Gm28033-201ENSMUST00000184224 96 ntBASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Gm42632-201ENSMUST00000201707 2411 ntBASIC14.75□□□□□ -0.05
Lima1Q9ERG0 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lima1Q9ERG0 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Gm12644-201ENSMUST00000119935 606 ntBASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC14.74□□□□□ -0.05
Lima1Q9ERG0 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Gm14722-201ENSMUST00000118943 689 ntBASIC14.73□□□□□ -0.05
Lima1Q9ERG0 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Gm18622-201ENSMUST00000219361 595 ntBASIC14.73□□□□□ -0.05
Lima1Q9ERG0 AC117588.1-201ENSMUST00000228510 999 ntBASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Lima1Q9ERG0 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
Lima1Q9ERG0 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Lima1Q9ERG0 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Lima1Q9ERG0 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.72□□□□□ -0.05
Lima1Q9ERG0 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Lima1Q9ERG0 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Lima1Q9ERG0 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC14.72□□□□□ -0.05
Lima1Q9ERG0 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Lima1Q9ERG0 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms