Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Use1Q9CQ56 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Use1Q9CQ56 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Use1Q9CQ56 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Use1Q9CQ56 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Use1Q9CQ56 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
Use1Q9CQ56 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Use1Q9CQ56 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Use1Q9CQ56 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Use1Q9CQ56 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Use1Q9CQ56 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Use1Q9CQ56 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Gm12134-201ENSMUST00000122109 520 ntBASIC14.11□□□□□ -0.15
Use1Q9CQ56 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Gm10499-201ENSMUST00000174094 934 ntBASIC14.11□□□□□ -0.15
Use1Q9CQ56 Gm37584-201ENSMUST00000193595 1290 ntBASIC14.11□□□□□ -0.15
Use1Q9CQ56 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Gm45504-201ENSMUST00000211407 2107 ntBASIC14.11□□□□□ -0.15
Use1Q9CQ56 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Use1Q9CQ56 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Gm4535-201ENSMUST00000182274 558 ntBASIC14.1□□□□□ -0.15
Use1Q9CQ56 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 AC160338.1-201ENSMUST00000214232 705 ntBASIC14.1□□□□□ -0.15
Use1Q9CQ56 Gm18669-201ENSMUST00000216049 778 ntBASIC14.1□□□□□ -0.15
Use1Q9CQ56 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Gm10355-201ENSMUST00000097146 517 ntBASIC14.1□□□□□ -0.15
Use1Q9CQ56 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Use1Q9CQ56 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC14.1□□□□□ -0.15
Use1Q9CQ56 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Fbxl12-205ENSMUST00000140702 1555 ntBASIC14.09□□□□□ -0.15
Use1Q9CQ56 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms