Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC17.35■□□□□ 0.37
Vps53Q8CCB4 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Gm13034-201ENSMUST00000121342 3177 ntBASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Gm7556-201ENSMUST00000201178 1084 ntBASIC17.34■□□□□ 0.37
Vps53Q8CCB4 AC093926.2-201ENSMUST00000214468 1228 ntBASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Gm7787-201ENSMUST00000216858 688 ntBASIC17.34■□□□□ 0.37
Vps53Q8CCB4 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Gm8396-201ENSMUST00000057361 823 ntBASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Vps53Q8CCB4 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Vps53Q8CCB4 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Vps53Q8CCB4 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Vps53Q8CCB4 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Vps53Q8CCB4 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC17.33■□□□□ 0.37
Vps53Q8CCB4 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC17.33■□□□□ 0.37
Vps53Q8CCB4 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Vps53Q8CCB4 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 AC154572.2-201ENSMUST00000225105 997 ntBASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Gm29340-201ENSMUST00000188763 3854 ntBASIC17.33■□□□□ 0.36
Vps53Q8CCB4 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC17.33■□□□□ 0.36
Vps53Q8CCB4 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Gm11185-201ENSMUST00000117732 1007 ntBASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC17.32■□□□□ 0.36
Vps53Q8CCB4 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms