Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Gm27622-201ENSMUST00000183779 60 ntBASIC18.41■□□□□ 0.54
Ddx58Q6Q899 Gm37277-201ENSMUST00000194052 1111 ntBASIC18.41■□□□□ 0.54
Ddx58Q6Q899 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ddx58Q6Q899 Gm20949-201ENSMUST00000206478 952 ntBASIC18.41■□□□□ 0.54
Ddx58Q6Q899 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Ddx58Q6Q899 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ddx58Q6Q899 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ddx58Q6Q899 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ddx58Q6Q899 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ddx58Q6Q899 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ddx58Q6Q899 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
Ddx58Q6Q899 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ddx58Q6Q899 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Gm43352-201ENSMUST00000196419 3065 ntBASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 BC037039-201ENSMUST00000192003 2205 ntBASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Gm8749-201ENSMUST00000117737 331 ntBASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Gm6539-201ENSMUST00000119157 1064 ntBASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Gm27618-201ENSMUST00000183671 60 ntBASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Gm21009-201ENSMUST00000197169 1669 ntBASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
Ddx58Q6Q899 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Ddx58Q6Q899 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Ddx58Q6Q899 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Ddx58Q6Q899 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Ddx58Q6Q899 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Ddx58Q6Q899 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 CT010478.1-201ENSMUST00000220747 2787 ntBASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Gm14057-201ENSMUST00000120631 482 ntBASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Gm4691-201ENSMUST00000182339 1000 ntBASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Gm18766-201ENSMUST00000189811 808 ntBASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Gm2451-201ENSMUST00000199447 999 ntBASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Gm10290-201ENSMUST00000200451 999 ntBASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 AC159621.2-201ENSMUST00000223519 1326 ntBASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddx58Q6Q899 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Gm45098-201ENSMUST00000207179 657 ntBASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx58Q6Q899 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ddx58Q6Q899 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx58Q6Q899 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx58Q6Q899 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx58Q6Q899 Gm8410-201ENSMUST00000117225 605 ntBASIC18.37■□□□□ 0.53
Ddx58Q6Q899 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx58Q6Q899 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx58Q6Q899 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx58Q6Q899 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx58Q6Q899 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms