Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Gm13410-201ENSMUST00000117058 1415 ntBASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Gm14057-201ENSMUST00000120631 482 ntBASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Rprl2-201ENSMUST00000157150 290 ntBASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Gpr146-202ENSMUST00000053120 1040 ntBASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 AC157650.3-201ENSMUST00000225058 1476 ntBASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC15.63■□□□□ 0.09
Hmgb4Q6P8W9 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Gm16198-201ENSMUST00000118766 670 ntBASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC15.62■□□□□ 0.09
Hmgb4Q6P8W9 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Gm18889-201ENSMUST00000174284 929 ntBASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Mir6990-201ENSMUST00000183724 91 ntBASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Gm43474-201ENSMUST00000196415 774 ntBASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Gm5628-201ENSMUST00000222318 1049 ntBASIC15.61■□□□□ 0.09
Hmgb4Q6P8W9 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms