Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Gm14701-201ENSMUST00000117156 348 ntBASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Gm9385-201ENSMUST00000117563 472 ntBASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 AC124549.3-201ENSMUST00000225541 367 ntBASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Gm13410-201ENSMUST00000117058 1415 ntBASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rtl3Q6P1Y1 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Gm6226-201ENSMUST00000117765 1146 ntBASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Gm30437-201ENSMUST00000206086 1201 ntBASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rtl3Q6P1Y1 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Rtl3Q6P1Y1 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Gm43195-201ENSMUST00000200614 2332 ntBASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Rtl3Q6P1Y1 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms