Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 AC093926.2-201ENSMUST00000214468 1228 ntBASIC13.92□□□□□ -0.18
ShhQ62226 Gm7787-201ENSMUST00000216858 688 ntBASIC13.92□□□□□ -0.18
ShhQ62226 AC124732.2-201ENSMUST00000221977 316 ntBASIC13.92□□□□□ -0.18
ShhQ62226 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC13.92□□□□□ -0.18
ShhQ62226 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Gm43352-201ENSMUST00000196419 3065 ntBASIC13.92□□□□□ -0.18
ShhQ62226 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
ShhQ62226 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
ShhQ62226 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
ShhQ62226 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
ShhQ62226 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC13.91□□□□□ -0.18
ShhQ62226 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC13.91□□□□□ -0.18
ShhQ62226 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
ShhQ62226 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC13.91□□□□□ -0.18
ShhQ62226 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC13.91□□□□□ -0.18
ShhQ62226 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC13.91□□□□□ -0.18
ShhQ62226 Gm25948-201ENSMUST00000175334 112 ntBASIC13.91□□□□□ -0.18
ShhQ62226 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 AC160980.1-201ENSMUST00000224136 970 ntBASIC13.91□□□□□ -0.18
ShhQ62226 AC140397.2-201ENSMUST00000224213 834 ntBASIC13.91□□□□□ -0.18
ShhQ62226 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC13.91□□□□□ -0.18
ShhQ62226 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
ShhQ62226 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC13.91□□□□□ -0.18
ShhQ62226 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC13.91□□□□□ -0.18
ShhQ62226 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ShhQ62226 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC13.9□□□□□ -0.18
ShhQ62226 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
ShhQ62226 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
ShhQ62226 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC13.9□□□□□ -0.18
ShhQ62226 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC13.9□□□□□ -0.18
ShhQ62226 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
ShhQ62226 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Gm7286-201ENSMUST00000182691 1007 ntBASIC13.9□□□□□ -0.18
ShhQ62226 Gm43767-201ENSMUST00000198933 381 ntBASIC13.9□□□□□ -0.18
ShhQ62226 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
ShhQ62226 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
ShhQ62226 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC13.9□□□□□ -0.18
ShhQ62226 Nrn1-204ENSMUST00000224323 1779 ntBASIC13.9□□□□□ -0.18
ShhQ62226 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC13.9□□□□□ -0.18
ShhQ62226 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
ShhQ62226 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ShhQ62226 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC13.9□□□□□ -0.19
ShhQ62226 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms