Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Mup-ps23-201ENSMUST00000118063 630 ntBASIC16.42■□□□□ 0.22
Col11a1Q61245 Trav4d-2-201ENSMUST00000120914 335 ntBASIC16.42■□□□□ 0.22
Col11a1Q61245 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC16.42■□□□□ 0.22
Col11a1Q61245 Gm45841-201ENSMUST00000207700 164 ntBASIC16.42■□□□□ 0.22
Col11a1Q61245 Gm5425-201ENSMUST00000214125 459 ntBASIC16.42■□□□□ 0.22
Col11a1Q61245 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Col11a1Q61245 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC16.41■□□□□ 0.22
Col11a1Q61245 Gm8749-201ENSMUST00000117737 331 ntBASIC16.41■□□□□ 0.22
Col11a1Q61245 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Col11a1Q61245 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC16.41■□□□□ 0.22
Col11a1Q61245 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Gm43179-201ENSMUST00000198797 275 ntBASIC16.41■□□□□ 0.22
Col11a1Q61245 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Col11a1Q61245 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC16.41■□□□□ 0.22
Col11a1Q61245 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC16.41■□□□□ 0.22
Col11a1Q61245 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 Gm20628-201ENSMUST00000177363 3215 ntBASIC16.41■□□□□ 0.22
Col11a1Q61245 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col11a1Q61245 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
Col11a1Q61245 AL645783.1-201ENSMUST00000221416 1832 ntBASIC16.4■□□□□ 0.22
Col11a1Q61245 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC16.4■□□□□ 0.22
Col11a1Q61245 Gm24196-201ENSMUST00000179161 110 ntBASIC16.4■□□□□ 0.22
Col11a1Q61245 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC16.4■□□□□ 0.22
Col11a1Q61245 Gm18827-201ENSMUST00000188341 790 ntBASIC16.4■□□□□ 0.22
Col11a1Q61245 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC16.4■□□□□ 0.22
Col11a1Q61245 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC16.4■□□□□ 0.22
Col11a1Q61245 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC16.4■□□□□ 0.22
Col11a1Q61245 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Col11a1Q61245 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC16.4■□□□□ 0.22
Col11a1Q61245 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Col11a1Q61245 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC16.4■□□□□ 0.22
Col11a1Q61245 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Col11a1Q61245 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC16.4■□□□□ 0.22
Col11a1Q61245 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col11a1Q61245 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC16.4■□□□□ 0.22
Col11a1Q61245 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Col11a1Q61245 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Col11a1Q61245 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Col11a1Q61245 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC16.39■□□□□ 0.21
Col11a1Q61245 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 AC159896.2-201ENSMUST00000214753 269 ntBASIC16.39■□□□□ 0.21
Col11a1Q61245 AC154319.1-201ENSMUST00000216330 312 ntBASIC16.39■□□□□ 0.21
Col11a1Q61245 AC155258.1-201ENSMUST00000219303 253 ntBASIC16.39■□□□□ 0.21
Col11a1Q61245 Gm17794-201ENSMUST00000220252 955 ntBASIC16.39■□□□□ 0.21
Col11a1Q61245 AC156560.2-201ENSMUST00000221232 264 ntBASIC16.39■□□□□ 0.21
Col11a1Q61245 AL589735.1-201ENSMUST00000224353 270 ntBASIC16.39■□□□□ 0.21
Col11a1Q61245 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Col11a1Q61245 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Olfr582-201ENSMUST00000098212 960 ntBASIC16.39■□□□□ 0.21
Col11a1Q61245 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC16.39■□□□□ 0.21
Col11a1Q61245 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC16.39■□□□□ 0.21
Col11a1Q61245 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col11a1Q61245 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC16.38■□□□□ 0.21
Col11a1Q61245 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms