Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 AC138767.1-201ENSMUST00000222661 415 ntBASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col28a1Q2UY11 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Gm12008-201ENSMUST00000117791 755 ntBASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Gm6376-201ENSMUST00000209407 580 ntBASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Gm19164-201ENSMUST00000210667 640 ntBASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 AC160338.1-201ENSMUST00000214232 705 ntBASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Gm6296-201ENSMUST00000222599 943 ntBASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms