Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lig3P97386 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Lig3P97386 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC16.3■□□□□ 0.2
Lig3P97386 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lig3P97386 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lig3P97386 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lig3P97386 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lig3P97386 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lig3P97386 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lig3P97386 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lig3P97386 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lig3P97386 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lig3P97386 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC16.29■□□□□ 0.2
Lig3P97386 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Lig3P97386 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Gm17968-201ENSMUST00000194902 784 ntBASIC16.29■□□□□ 0.2
Lig3P97386 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16.29■□□□□ 0.2
Lig3P97386 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC16.29■□□□□ 0.2
Lig3P97386 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC16.29■□□□□ 0.2
Lig3P97386 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC16.29■□□□□ 0.2
Lig3P97386 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Lig3P97386 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Lig3P97386 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.29■□□□□ 0.2
Lig3P97386 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Lig3P97386 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lig3P97386 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC16.29■□□□□ 0.2
Lig3P97386 Rbfox2-206ENSMUST00000227314 1810 ntBASIC16.29■□□□□ 0.2
Lig3P97386 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC16.28■□□□□ 0.2
Lig3P97386 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Lig3P97386 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Lig3P97386 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC16.28■□□□□ 0.2
Lig3P97386 Gm44335-201ENSMUST00000196879 141 ntBASIC16.28■□□□□ 0.2
Lig3P97386 Gm44297-201ENSMUST00000198304 141 ntBASIC16.28■□□□□ 0.2
Lig3P97386 Gm44346-201ENSMUST00000198851 141 ntBASIC16.28■□□□□ 0.2
Lig3P97386 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.28■□□□□ 0.2
Lig3P97386 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC16.28■□□□□ 0.2
Lig3P97386 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC16.28■□□□□ 0.2
Lig3P97386 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Lig3P97386 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
Lig3P97386 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lig3P97386 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC16.27■□□□□ 0.2
Lig3P97386 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Lig3P97386 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Gm43697-201ENSMUST00000199637 2581 ntBASIC16.27■□□□□ 0.2
Lig3P97386 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
Lig3P97386 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Lig3P97386 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lig3P97386 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Lig3P97386 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Lig3P97386 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC16.27■□□□□ 0.19
Lig3P97386 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Lig3P97386 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Lig3P97386 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Lig3P97386 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Lig3P97386 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Lig3P97386 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Lig3P97386 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Lig3P97386 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms