Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Cdh11P55288 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
Cdh11P55288 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Cdh11P55288 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Cdh11P55288 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Cdh11P55288 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Cdh11P55288 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Cdh11P55288 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Cdh11P55288 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Cdh11P55288 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Cdh11P55288 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Cdh11P55288 Gm5837-201ENSMUST00000191844 1369 ntBASIC13.6□□□□□ -0.23
Cdh11P55288 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC13.6□□□□□ -0.23
Cdh11P55288 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Cdh11P55288 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Cdh11P55288 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC13.6□□□□□ -0.23
Cdh11P55288 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Cdh11P55288 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
Cdh11P55288 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
Cdh11P55288 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC13.6□□□□□ -0.23
Cdh11P55288 Mir5126-201ENSMUST00000175513 77 ntBASIC13.6□□□□□ -0.23
Cdh11P55288 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Cdh11P55288 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Cdh11P55288 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Cdh11P55288 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Cdh11P55288 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cdh11P55288 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Cdh11P55288 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Cdh11P55288 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Gm37297-201ENSMUST00000192974 2384 ntBASIC13.59□□□□□ -0.23
Cdh11P55288 Gm13337-201ENSMUST00000119183 1594 ntBASIC13.59□□□□□ -0.23
Cdh11P55288 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Gm37500-201ENSMUST00000192059 1443 ntBASIC13.59□□□□□ -0.23
Cdh11P55288 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Cdh11P55288 Gm12350-201ENSMUST00000121208 462 ntBASIC13.59□□□□□ -0.23
Cdh11P55288 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC13.59□□□□□ -0.23
Cdh11P55288 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Cdh11P55288 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC13.59□□□□□ -0.23
Cdh11P55288 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC13.59□□□□□ -0.23
Cdh11P55288 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Cdh11P55288 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC13.59□□□□□ -0.23
Cdh11P55288 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Cdh11P55288 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cdh11P55288 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Cdh11P55288 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Cdh11P55288 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.23
Cdh11P55288 AC167013.2-201ENSMUST00000228520 2684 ntBASIC13.58□□□□□ -0.23
Cdh11P55288 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cdh11P55288 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cdh11P55288 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Cdh11P55288 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cdh11P55288 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Cdh11P55288 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cdh11P55288 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Cdh11P55288 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC13.58□□□□□ -0.24
Cdh11P55288 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Cdh11P55288 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC13.58□□□□□ -0.24
Cdh11P55288 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC13.58□□□□□ -0.24
Cdh11P55288 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC13.58□□□□□ -0.24
Cdh11P55288 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cdh11P55288 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC13.58□□□□□ -0.24
Cdh11P55288 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cdh11P55288 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC13.58□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms