Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm26095-201ENSMUST00000179270 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm22171-201ENSMUST00000179283 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm23936-201ENSMUST00000179354 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm22619-201ENSMUST00000179516 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm25255-201ENSMUST00000179579 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm24755-201ENSMUST00000179691 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm26506-201ENSMUST00000179692 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm25086-201ENSMUST00000179931 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm23243-201ENSMUST00000180047 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm24659-201ENSMUST00000180212 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm24169-201ENSMUST00000180244 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm23689-201ENSMUST00000180354 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm27359-201ENSMUST00000184153 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm27785-201ENSMUST00000184268 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm27466-201ENSMUST00000184396 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm27703-201ENSMUST00000184836 110 ntBASIC17.24■□□□□ 0.35
Traf1P39428 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC17.24■□□□□ 0.35
Traf1P39428 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Traf1P39428 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
Traf1P39428 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC17.24■□□□□ 0.35
Traf1P39428 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC17.24■□□□□ 0.35
Traf1P39428 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Traf1P39428 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
Traf1P39428 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Traf1P39428 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
Traf1P39428 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Traf1P39428 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC17.23■□□□□ 0.35
Traf1P39428 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Traf1P39428 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Traf1P39428 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Traf1P39428 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Traf1P39428 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Traf1P39428 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC17.23■□□□□ 0.35
Traf1P39428 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Traf1P39428 Gm24158-201ENSMUST00000175263 71 ntBASIC17.23■□□□□ 0.35
Traf1P39428 Auts2-212ENSMUST00000178555 309 ntBASIC17.23■□□□□ 0.35
Traf1P39428 Gm10253-201ENSMUST00000194270 940 ntBASIC17.23■□□□□ 0.35
Traf1P39428 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Traf1P39428 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC17.23■□□□□ 0.35
Traf1P39428 AC124732.2-201ENSMUST00000221977 316 ntBASIC17.23■□□□□ 0.35
Traf1P39428 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Traf1P39428 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Traf1P39428 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Traf1P39428 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Traf1P39428 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC17.23■□□□□ 0.35
Traf1P39428 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Traf1P39428 Fgf17-202ENSMUST00000227123 1336 ntBASIC17.22■□□□□ 0.35
Traf1P39428 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Mir449b-201ENSMUST00000104833 80 ntBASIC17.22■□□□□ 0.35
Traf1P39428 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC17.22■□□□□ 0.35
Traf1P39428 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC17.22■□□□□ 0.35
Traf1P39428 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Gm27430-201ENSMUST00000184585 107 ntBASIC17.22■□□□□ 0.35
Traf1P39428 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC17.22■□□□□ 0.35
Traf1P39428 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC17.22■□□□□ 0.35
Traf1P39428 Gm44333-201ENSMUST00000197168 107 ntBASIC17.22■□□□□ 0.35
Traf1P39428 AC139382.1-201ENSMUST00000221402 498 ntBASIC17.22■□□□□ 0.35
Traf1P39428 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC17.22■□□□□ 0.35
Traf1P39428 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Traf1P39428 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC17.21■□□□□ 0.35
Traf1P39428 Gm6018-201ENSMUST00000216090 1306 ntBASIC17.21■□□□□ 0.35
Traf1P39428 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Traf1P39428 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Traf1P39428 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Traf1P39428 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Traf1P39428 Tfap2a-203ENSMUST00000223869 2037 ntBASIC17.21■□□□□ 0.35
Traf1P39428 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC17.21■□□□□ 0.35
Traf1P39428 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
Traf1P39428 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Traf1P39428 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Traf1P39428 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Traf1P39428 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Traf1P39428 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms