Protein–RNA interactions for Protein: P33435

Mmp13, Collagenase 3, mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp13P33435 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Mmp13P33435 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Mmp13P33435 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC15.29■□□□□ 0.04
Mmp13P33435 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Mmp13P33435 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Mmp13P33435 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Mmp13P33435 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC15.29■□□□□ 0.04
Mmp13P33435 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC15.29■□□□□ 0.04
Mmp13P33435 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Mmp13P33435 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Mmp13P33435 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Mmp13P33435 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Gm43195-201ENSMUST00000200614 2332 ntBASIC15.28■□□□□ 0.04
Mmp13P33435 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Mmp13P33435 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC15.28■□□□□ 0.04
Mmp13P33435 Gm3928-201ENSMUST00000121141 1307 ntBASIC15.28■□□□□ 0.04
Mmp13P33435 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Gm7222-201ENSMUST00000117512 906 ntBASIC15.28■□□□□ 0.04
Mmp13P33435 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Mmp13P33435 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Mmp13P33435 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Mmp13P33435 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Mmp13P33435 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Mmp13P33435 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Mmp13P33435 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Mmp13P33435 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Mmp13P33435 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Mmp13P33435 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Mmp13P33435 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Mmp13P33435 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Mmp13P33435 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC15.27■□□□□ 0.04
Mmp13P33435 Gm8318-201ENSMUST00000182954 872 ntBASIC15.27■□□□□ 0.04
Mmp13P33435 Gm6550-201ENSMUST00000187574 993 ntBASIC15.27■□□□□ 0.04
Mmp13P33435 Gm6443-201ENSMUST00000203599 874 ntBASIC15.27■□□□□ 0.04
Mmp13P33435 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Mmp13P33435 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC15.27■□□□□ 0.04
Mmp13P33435 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Mmp13P33435 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Mmp13P33435 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Mmp13P33435 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Mmp13P33435 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Mmp13P33435 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC15.27■□□□□ 0.03
Mmp13P33435 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Mmp13P33435 Carlr-201ENSMUST00000181515 2574 ntBASIC15.27■□□□□ 0.03
Mmp13P33435 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Mmp13P33435 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC15.26■□□□□ 0.03
Mmp13P33435 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Mmp13P33435 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Mmp13P33435 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC15.26■□□□□ 0.03
Mmp13P33435 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Mmp13P33435 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC15.26■□□□□ 0.03
Mmp13P33435 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC15.26■□□□□ 0.03
Mmp13P33435 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC15.26■□□□□ 0.03
Mmp13P33435 AC122024.2-201ENSMUST00000220086 871 ntBASIC15.26■□□□□ 0.03
Mmp13P33435 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC15.26■□□□□ 0.03
Mmp13P33435 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Gm45293-201ENSMUST00000209754 1812 ntBASIC15.26■□□□□ 0.03
Mmp13P33435 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Mmp13P33435 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC15.26■□□□□ 0.03
Mmp13P33435 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms