Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm45605-201ENSMUST00000210265 4269 ntBASIC16.15■□□□□ 0.18
RaraP11416 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC16.15■□□□□ 0.18
RaraP11416 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RaraP11416 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RaraP11416 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RaraP11416 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RaraP11416 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
RaraP11416 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RaraP11416 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RaraP11416 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RaraP11416 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
RaraP11416 Gm12008-201ENSMUST00000117791 755 ntBASIC16.14■□□□□ 0.17
RaraP11416 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RaraP11416 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC16.14■□□□□ 0.17
RaraP11416 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RaraP11416 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RaraP11416 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RaraP11416 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RaraP11416 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RaraP11416 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RaraP11416 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RaraP11416 Gm18856-201ENSMUST00000178096 1374 ntBASIC16.13■□□□□ 0.17
RaraP11416 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC16.13■□□□□ 0.17
RaraP11416 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC16.13■□□□□ 0.17
RaraP11416 Gm38058-201ENSMUST00000194323 4368 ntBASIC16.13■□□□□ 0.17
RaraP11416 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.13■□□□□ 0.17
RaraP11416 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
RaraP11416 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC16.13■□□□□ 0.17
RaraP11416 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC16.13■□□□□ 0.17
RaraP11416 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RaraP11416 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
RaraP11416 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RaraP11416 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC16.13■□□□□ 0.17
RaraP11416 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RaraP11416 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC16.12■□□□□ 0.17
RaraP11416 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
RaraP11416 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC16.12■□□□□ 0.17
RaraP11416 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Gm9103-201ENSMUST00000119371 405 ntBASIC16.12■□□□□ 0.17
RaraP11416 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Gm6376-201ENSMUST00000209407 580 ntBASIC16.12■□□□□ 0.17
RaraP11416 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
RaraP11416 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
RaraP11416 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
RaraP11416 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RaraP11416 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RaraP11416 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RaraP11416 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC16.12■□□□□ 0.17
RaraP11416 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
RaraP11416 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 AC130671.1-201ENSMUST00000227384 1237 ntBASIC16.11■□□□□ 0.17
RaraP11416 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
RaraP11416 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms