Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Lire1P11260 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Lire1P11260 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Gm37728-201ENSMUST00000195025 2292 ntBASIC14.16□□□□□ -0.14
Lire1P11260 Gm43677-201ENSMUST00000198098 2378 ntBASIC14.16□□□□□ -0.14
Lire1P11260 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Lire1P11260 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Lire1P11260 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC14.15□□□□□ -0.14
Lire1P11260 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC14.15□□□□□ -0.14
Lire1P11260 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Gm25745-201ENSMUST00000174945 133 ntBASIC14.15□□□□□ -0.14
Lire1P11260 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC14.15□□□□□ -0.14
Lire1P11260 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
Lire1P11260 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.15□□□□□ -0.14
Lire1P11260 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Lire1P11260 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lire1P11260 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC14.14□□□□□ -0.15
Lire1P11260 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Lire1P11260 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Lire1P11260 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Gm11779-201ENSMUST00000118541 368 ntBASIC14.14□□□□□ -0.15
Lire1P11260 Gm12497-201ENSMUST00000138778 237 ntBASIC14.14□□□□□ -0.15
Lire1P11260 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
Lire1P11260 Gm6736-201ENSMUST00000166583 948 ntBASIC14.14□□□□□ -0.15
Lire1P11260 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC14.14□□□□□ -0.15
Lire1P11260 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC14.14□□□□□ -0.15
Lire1P11260 AC159093.1-201ENSMUST00000227779 380 ntBASIC14.14□□□□□ -0.15
Lire1P11260 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC14.14□□□□□ -0.15
Lire1P11260 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Lire1P11260 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC14.14□□□□□ -0.15
Lire1P11260 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Lire1P11260 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC14.14□□□□□ -0.15
Lire1P11260 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Lire1P11260 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.14□□□□□ -0.15
Lire1P11260 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lire1P11260 Gm9889-202ENSMUST00000206983 1577 ntBASIC14.13□□□□□ -0.15
Lire1P11260 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Lire1P11260 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Lire1P11260 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lire1P11260 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms