Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
Col1a1P11087 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 Gm5354-201ENSMUST00000182417 973 ntBASIC17.28■□□□□ 0.36
Col1a1P11087 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC17.28■□□□□ 0.36
Col1a1P11087 Gm6007-201ENSMUST00000208170 823 ntBASIC17.28■□□□□ 0.36
Col1a1P11087 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
Col1a1P11087 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC17.28■□□□□ 0.36
Col1a1P11087 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Col1a1P11087 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col1a1P11087 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC17.27■□□□□ 0.36
Col1a1P11087 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Col1a1P11087 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
Col1a1P11087 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Gm12960-201ENSMUST00000120017 1066 ntBASIC17.27■□□□□ 0.36
Col1a1P11087 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col1a1P11087 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col1a1P11087 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col1a1P11087 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC17.26■□□□□ 0.35
Col1a1P11087 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC17.26■□□□□ 0.35
Col1a1P11087 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC17.26■□□□□ 0.35
Col1a1P11087 AC139580.1-202ENSMUST00000223574 928 ntBASIC17.26■□□□□ 0.35
Col1a1P11087 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Col1a1P11087 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC17.26■□□□□ 0.35
Col1a1P11087 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Col1a1P11087 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Col1a1P11087 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col1a1P11087 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC17.25■□□□□ 0.35
Col1a1P11087 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Col1a1P11087 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Gm15678-201ENSMUST00000117573 960 ntBASIC17.25■□□□□ 0.35
Col1a1P11087 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC17.25■□□□□ 0.35
Col1a1P11087 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Gm33320-201ENSMUST00000192232 530 ntBASIC17.25■□□□□ 0.35
Col1a1P11087 Gm6916-202ENSMUST00000205523 195 ntBASIC17.25■□□□□ 0.35
Col1a1P11087 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Col1a1P11087 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC17.25■□□□□ 0.35
Col1a1P11087 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Col1a1P11087 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Prob1-201ENSMUST00000097619 3021 ntBASIC17.25■□□□□ 0.35
Col1a1P11087 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col1a1P11087 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC17.24■□□□□ 0.35
Col1a1P11087 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Col1a1P11087 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC17.24■□□□□ 0.35
Col1a1P11087 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col1a1P11087 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms