Protein–RNA interactions for Protein: O54788

Dffb, DNA fragmentation factor subunit beta, mousemouse

Known RBP Predictions only

Length 344 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DffbO54788 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
DffbO54788 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
DffbO54788 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
DffbO54788 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
DffbO54788 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
DffbO54788 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
DffbO54788 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC12.84□□□□□ -0.35
DffbO54788 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
DffbO54788 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
DffbO54788 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
DffbO54788 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
DffbO54788 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
DffbO54788 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
DffbO54788 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
DffbO54788 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC12.83□□□□□ -0.35
DffbO54788 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC12.83□□□□□ -0.35
DffbO54788 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC12.83□□□□□ -0.36
DffbO54788 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC12.83□□□□□ -0.36
DffbO54788 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC12.83□□□□□ -0.36
DffbO54788 Gm43195-201ENSMUST00000200614 2332 ntBASIC12.83□□□□□ -0.36
DffbO54788 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Celf4-206ENSMUST00000224553 1729 ntBASIC12.83□□□□□ -0.36
DffbO54788 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC12.83□□□□□ -0.36
DffbO54788 Gm21362-201ENSMUST00000194272 928 ntBASIC12.83□□□□□ -0.36
DffbO54788 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC12.83□□□□□ -0.36
DffbO54788 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 AC108846.1-201ENSMUST00000214531 513 ntBASIC12.83□□□□□ -0.36
DffbO54788 Cmtm5-203ENSMUST00000227441 610 ntBASIC12.83□□□□□ -0.36
DffbO54788 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
DffbO54788 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
DffbO54788 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC12.83□□□□□ -0.36
DffbO54788 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Gm12620-201ENSMUST00000119791 1986 ntBASIC12.83□□□□□ -0.36
DffbO54788 Gm12612-201ENSMUST00000140182 1986 ntBASIC12.83□□□□□ -0.36
DffbO54788 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Gm43399-201ENSMUST00000202546 2374 ntBASIC12.83□□□□□ -0.36
DffbO54788 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
DffbO54788 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Carlr-201ENSMUST00000181515 2574 ntBASIC12.82□□□□□ -0.36
DffbO54788 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
DffbO54788 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
DffbO54788 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
DffbO54788 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Gm7284-201ENSMUST00000131667 944 ntBASIC12.82□□□□□ -0.36
DffbO54788 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
DffbO54788 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC12.82□□□□□ -0.36
DffbO54788 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC12.82□□□□□ -0.36
DffbO54788 Gm8655-201ENSMUST00000221159 852 ntBASIC12.82□□□□□ -0.36
DffbO54788 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Gm45293-201ENSMUST00000209754 1812 ntBASIC12.82□□□□□ -0.36
DffbO54788 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
DffbO54788 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
DffbO54788 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
DffbO54788 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
DffbO54788 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC12.81□□□□□ -0.36
DffbO54788 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
DffbO54788 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
DffbO54788 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
DffbO54788 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
DffbO54788 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
DffbO54788 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC12.81□□□□□ -0.36
DffbO54788 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
DffbO54788 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
DffbO54788 Gm8097-201ENSMUST00000117903 829 ntBASIC12.81□□□□□ -0.36
DffbO54788 Gm15358-201ENSMUST00000119249 520 ntBASIC12.81□□□□□ -0.36
DffbO54788 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms