Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm5763-201ENSMUST00000155951 1530 ntBASIC17.5■□□□□ 0.39
Scn11aQ9R053 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC17.5■□□□□ 0.39
Scn11aQ9R053 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Gm9252-201ENSMUST00000172364 1602 ntBASIC17.49■□□□□ 0.39
Scn11aQ9R053 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC17.49■□□□□ 0.39
Scn11aQ9R053 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Gm23984-201ENSMUST00000157139 203 ntBASIC17.49■□□□□ 0.39
Scn11aQ9R053 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC17.49■□□□□ 0.39
Scn11aQ9R053 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn11aQ9R053 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Gm4204-201ENSMUST00000110798 1231 ntBASIC17.48■□□□□ 0.39
Scn11aQ9R053 Gm8602-201ENSMUST00000184045 607 ntBASIC17.48■□□□□ 0.39
Scn11aQ9R053 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Gm6745-201ENSMUST00000199216 526 ntBASIC17.48■□□□□ 0.39
Scn11aQ9R053 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Syt7-204ENSMUST00000223586 1344 ntBASIC17.48■□□□□ 0.39
Scn11aQ9R053 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Gm45751-201ENSMUST00000210185 1573 ntBASIC17.48■□□□□ 0.39
Scn11aQ9R053 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Scn11aQ9R053 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Gm6218-201ENSMUST00000219812 628 ntBASIC17.48■□□□□ 0.39
Scn11aQ9R053 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Gm6180-201ENSMUST00000065243 498 ntBASIC17.48■□□□□ 0.39
Scn11aQ9R053 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn11aQ9R053 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 AC174678.1-201ENSMUST00000228007 2749 ntBASIC17.47■□□□□ 0.39
Scn11aQ9R053 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC17.47■□□□□ 0.39
Scn11aQ9R053 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC17.47■□□□□ 0.39
Scn11aQ9R053 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC17.47■□□□□ 0.39
Scn11aQ9R053 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Gm37748-201ENSMUST00000194379 1140 ntBASIC17.47■□□□□ 0.39
Scn11aQ9R053 Gm46209-201ENSMUST00000217912 553 ntBASIC17.47■□□□□ 0.39
Scn11aQ9R053 AC149294.4-201ENSMUST00000227870 882 ntBASIC17.47■□□□□ 0.39
Scn11aQ9R053 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms