Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Gm8318-201ENSMUST00000182954 872 ntBASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Gm10175-201ENSMUST00000086013 645 ntBASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Cdc40Q9DC48 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
Cdc40Q9DC48 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 AC154412.1-201ENSMUST00000226540 2786 ntBASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 H2af-ps-201ENSMUST00000119066 295 ntBASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Gm11839-201ENSMUST00000120647 1953 ntBASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Cdc40Q9DC48 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 AC157650.3-201ENSMUST00000225058 1476 ntBASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Mir7036b-201ENSMUST00000184791 63 ntBASIC13.88□□□□□ -0.19
Cdc40Q9DC48 AC151286.1-201ENSMUST00000198489 145 ntBASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 AC147366.1-201ENSMUST00000227671 852 ntBASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdc40Q9DC48 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms