Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm15191-201ENSMUST00000117933 1000 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm12182-201ENSMUST00000118655 1008 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm13882-201ENSMUST00000120886 1002 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm10284-201ENSMUST00000145057 1005 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm25911-201ENSMUST00000157621 56 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm10481-201ENSMUST00000179228 1002 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm2574-201ENSMUST00000181051 1002 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm3200-201ENSMUST00000181493 1002 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm8825-201ENSMUST00000182565 998 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm4518-201ENSMUST00000182638 718 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm8330-201ENSMUST00000182754 1008 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm4575-201ENSMUST00000182991 1002 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm8709-201ENSMUST00000183230 1012 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 AC174742.1-201ENSMUST00000218272 304 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm10293-201ENSMUST00000076317 1002 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm6316-201ENSMUST00000082064 1020 ntBASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1aQ9CU62 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Gm26308-201ENSMUST00000157768 69 ntBASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Gm43697-201ENSMUST00000199637 2581 ntBASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1aQ9CU62 Gm11873-201ENSMUST00000117877 1304 ntBASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC16.71■□□□□ 0.27
Smc1aQ9CU62 AC151286.1-201ENSMUST00000198489 145 ntBASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Smc1aQ9CU62 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
Smc1aQ9CU62 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
Smc1aQ9CU62 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
Smc1aQ9CU62 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Smc1aQ9CU62 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Bloc1s5-203ENSMUST00000224902 612 ntBASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms