Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lsm1Q8VC85 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lsm1Q8VC85 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lsm1Q8VC85 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lsm1Q8VC85 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Lsm1Q8VC85 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lsm1Q8VC85 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 AC164567.1-201ENSMUST00000219185 960 ntBASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Gm9856-201ENSMUST00000217077 2578 ntBASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lsm1Q8VC85 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 AC162938.1-201ENSMUST00000213140 2323 ntBASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Gm23547-201ENSMUST00000158210 271 ntBASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Gm27459-201ENSMUST00000184860 107 ntBASIC14.34□□□□□ -0.11
Lsm1Q8VC85 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Gm43697-201ENSMUST00000199637 2581 ntBASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Gm37912-201ENSMUST00000191895 3076 ntBASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lsm1Q8VC85 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Lsm1Q8VC85 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
Lsm1Q8VC85 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Lsm1Q8VC85 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Lsm1Q8VC85 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Lsm1Q8VC85 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Lsm1Q8VC85 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Lsm1Q8VC85 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Lsm1Q8VC85 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lsm1Q8VC85 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lsm1Q8VC85 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lsm1Q8VC85 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lsm1Q8VC85 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lsm1Q8VC85 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC14.33□□□□□ -0.12
Lsm1Q8VC85 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC14.33□□□□□ -0.12
Lsm1Q8VC85 AC147366.1-201ENSMUST00000227671 852 ntBASIC14.33□□□□□ -0.12
Lsm1Q8VC85 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lsm1Q8VC85 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lsm1Q8VC85 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lsm1Q8VC85 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms