Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Clrn1Q8K445 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC14.11□□□□□ -0.15
Clrn1Q8K445 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC14.11□□□□□ -0.15
Clrn1Q8K445 Gm9867-201ENSMUST00000192212 2647 ntBASIC14.11□□□□□ -0.15
Clrn1Q8K445 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC14.11□□□□□ -0.15
Clrn1Q8K445 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Gm13294-201ENSMUST00000121757 1330 ntBASIC14.11□□□□□ -0.15
Clrn1Q8K445 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clrn1Q8K445 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Gm14140-201ENSMUST00000119999 995 ntBASIC14.1□□□□□ -0.15
Clrn1Q8K445 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC14.1□□□□□ -0.15
Clrn1Q8K445 Gm1401-201ENSMUST00000122048 772 ntBASIC14.1□□□□□ -0.15
Clrn1Q8K445 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Psmb5-202ENSMUST00000227257 622 ntBASIC14.1□□□□□ -0.15
Clrn1Q8K445 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC14.1□□□□□ -0.15
Clrn1Q8K445 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Gm43195-201ENSMUST00000200614 2332 ntBASIC14.1□□□□□ -0.15
Clrn1Q8K445 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Clrn1Q8K445 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Clrn1Q8K445 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Gm43767-201ENSMUST00000198933 381 ntBASIC14.09□□□□□ -0.15
Clrn1Q8K445 Gm44771-201ENSMUST00000206975 626 ntBASIC14.09□□□□□ -0.15
Clrn1Q8K445 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Clrn1Q8K445 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC14.09□□□□□ -0.15
Clrn1Q8K445 CT010506.4-201ENSMUST00000225457 351 ntBASIC14.09□□□□□ -0.15
Clrn1Q8K445 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Clrn1Q8K445 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC14.08□□□□□ -0.15
Clrn1Q8K445 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Clrn1Q8K445 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms