Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 Gm1335-201ENSMUST00000121653 386 ntBASIC12.12□□□□□ -0.47
Col7a1Q63870 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC12.12□□□□□ -0.47
Col7a1Q63870 AC154462.2-201ENSMUST00000227519 370 ntBASIC12.12□□□□□ -0.47
Col7a1Q63870 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 Gm5620-201ENSMUST00000077991 1348 ntBASIC12.12□□□□□ -0.47
Col7a1Q63870 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
Col7a1Q63870 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC12.12□□□□□ -0.47
Col7a1Q63870 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Col7a1Q63870 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC12.11□□□□□ -0.47
Col7a1Q63870 Gm11803-201ENSMUST00000119966 444 ntBASIC12.11□□□□□ -0.47
Col7a1Q63870 Gm15376-201ENSMUST00000122258 783 ntBASIC12.11□□□□□ -0.47
Col7a1Q63870 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Gm5850-201ENSMUST00000192923 1206 ntBASIC12.11□□□□□ -0.47
Col7a1Q63870 Gm6916-202ENSMUST00000205523 195 ntBASIC12.11□□□□□ -0.47
Col7a1Q63870 Gm29705-201ENSMUST00000212598 474 ntBASIC12.11□□□□□ -0.47
Col7a1Q63870 CT030182.1-201ENSMUST00000225935 533 ntBASIC12.11□□□□□ -0.47
Col7a1Q63870 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC12.11□□□□□ -0.47
Col7a1Q63870 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
Col7a1Q63870 Mir5120-201ENSMUST00000175020 78 ntBASIC12.11□□□□□ -0.47
Col7a1Q63870 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Col7a1Q63870 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC12.11□□□□□ -0.47
Col7a1Q63870 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Col7a1Q63870 Snord83b-201ENSMUST00000104546 94 ntBASIC12.1□□□□□ -0.47
Col7a1Q63870 Gm15460-201ENSMUST00000118147 391 ntBASIC12.1□□□□□ -0.47
Col7a1Q63870 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.1□□□□□ -0.47
Col7a1Q63870 Proscos-202ENSMUST00000178990 666 ntBASIC12.1□□□□□ -0.47
Col7a1Q63870 Gm6983-201ENSMUST00000214912 628 ntBASIC12.1□□□□□ -0.47
Col7a1Q63870 Abhd11os-203ENSMUST00000222613 363 ntBASIC12.1□□□□□ -0.47
Col7a1Q63870 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 Tfap2a-203ENSMUST00000223869 2037 ntBASIC12.1□□□□□ -0.47
Col7a1Q63870 Gm11628-201ENSMUST00000117568 171 ntBASIC12.1□□□□□ -0.47
Col7a1Q63870 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC12.1□□□□□ -0.47
Col7a1Q63870 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 AC153872.1-201ENSMUST00000199539 128 ntBASIC12.1□□□□□ -0.47
Col7a1Q63870 Gm4971-201ENSMUST00000205991 1108 ntBASIC12.1□□□□□ -0.47
Col7a1Q63870 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Col7a1Q63870 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Col7a1Q63870 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Col7a1Q63870 Gm15240-201ENSMUST00000118156 720 ntBASIC12.1□□□□□ -0.47
Col7a1Q63870 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC12.1□□□□□ -0.47
Col7a1Q63870 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 Gm34767-201ENSMUST00000191813 1062 ntBASIC12.1□□□□□ -0.47
Col7a1Q63870 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col7a1Q63870 Gm10702-201ENSMUST00000098929 1268 ntBASIC12.1□□□□□ -0.47
Col7a1Q63870 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Col7a1Q63870 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col7a1Q63870 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col7a1Q63870 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col7a1Q63870 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Col7a1Q63870 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Col7a1Q63870 Gm8213-201ENSMUST00000118191 441 ntBASIC12.09□□□□□ -0.47
Col7a1Q63870 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col7a1Q63870 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col7a1Q63870 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col7a1Q63870 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Col7a1Q63870 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col7a1Q63870 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col7a1Q63870 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col7a1Q63870 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col7a1Q63870 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col7a1Q63870 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Col7a1Q63870 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC12.09□□□□□ -0.47
Col7a1Q63870 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC12.09□□□□□ -0.47
Col7a1Q63870 Gm8566-201ENSMUST00000120174 465 ntBASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms