Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Mir7036b-201ENSMUST00000184791 63 ntBASIC13.95□□□□□ -0.18
ShhQ62226 AC155252.2-201ENSMUST00000226946 680 ntBASIC13.95□□□□□ -0.18
ShhQ62226 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 BC037039-201ENSMUST00000192003 2205 ntBASIC13.95□□□□□ -0.18
ShhQ62226 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC13.95□□□□□ -0.18
ShhQ62226 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
ShhQ62226 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
ShhQ62226 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC13.95□□□□□ -0.18
ShhQ62226 Asic1-205ENSMUST00000228185 1818 ntBASIC13.94□□□□□ -0.18
ShhQ62226 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
ShhQ62226 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Gm8344-201ENSMUST00000119813 856 ntBASIC13.94□□□□□ -0.18
ShhQ62226 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC13.94□□□□□ -0.18
ShhQ62226 Gm23547-201ENSMUST00000158210 271 ntBASIC13.94□□□□□ -0.18
ShhQ62226 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Gm2308-201ENSMUST00000166539 1004 ntBASIC13.94□□□□□ -0.18
ShhQ62226 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Gm4899-201ENSMUST00000178708 719 ntBASIC13.94□□□□□ -0.18
ShhQ62226 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC13.94□□□□□ -0.18
ShhQ62226 AC122024.2-201ENSMUST00000220086 871 ntBASIC13.94□□□□□ -0.18
ShhQ62226 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
ShhQ62226 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC13.94□□□□□ -0.18
ShhQ62226 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC13.94□□□□□ -0.18
ShhQ62226 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ShhQ62226 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
ShhQ62226 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
ShhQ62226 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC13.93□□□□□ -0.18
ShhQ62226 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
ShhQ62226 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
ShhQ62226 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC13.93□□□□□ -0.18
ShhQ62226 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC13.93□□□□□ -0.18
ShhQ62226 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC13.93□□□□□ -0.18
ShhQ62226 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
ShhQ62226 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
ShhQ62226 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC13.93□□□□□ -0.18
ShhQ62226 Mir6977-201ENSMUST00000184960 64 ntBASIC13.93□□□□□ -0.18
ShhQ62226 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC13.93□□□□□ -0.18
ShhQ62226 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
ShhQ62226 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC13.93□□□□□ -0.18
ShhQ62226 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
ShhQ62226 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC13.92□□□□□ -0.18
ShhQ62226 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
ShhQ62226 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
ShhQ62226 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC13.92□□□□□ -0.18
ShhQ62226 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Gm13365-201ENSMUST00000121188 973 ntBASIC13.92□□□□□ -0.18
ShhQ62226 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ShhQ62226 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC13.92□□□□□ -0.18
ShhQ62226 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC13.92□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms