Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col11a1Q61245 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Col11a1Q61245 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col11a1Q61245 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Col11a1Q61245 Gm38037-201ENSMUST00000192600 1624 ntBASIC16.47■□□□□ 0.23
Col11a1Q61245 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col11a1Q61245 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col11a1Q61245 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col11a1Q61245 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col11a1Q61245 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col11a1Q61245 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Col11a1Q61245 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col11a1Q61245 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
Col11a1Q61245 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Col11a1Q61245 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col11a1Q61245 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col11a1Q61245 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col11a1Q61245 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Col11a1Q61245 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col11a1Q61245 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col11a1Q61245 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col11a1Q61245 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col11a1Q61245 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col11a1Q61245 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col11a1Q61245 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col11a1Q61245 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Col11a1Q61245 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col11a1Q61245 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col11a1Q61245 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Col11a1Q61245 App-207ENSMUST00000227737 2827 ntBASIC16.45■□□□□ 0.22
Col11a1Q61245 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Col11a1Q61245 Gm9728-201ENSMUST00000200197 1055 ntBASIC16.45■□□□□ 0.22
Col11a1Q61245 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC16.45■□□□□ 0.22
Col11a1Q61245 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
Col11a1Q61245 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
Col11a1Q61245 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC16.45■□□□□ 0.22
Col11a1Q61245 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC16.45■□□□□ 0.22
Col11a1Q61245 Gm8775-201ENSMUST00000170943 1327 ntBASIC16.45■□□□□ 0.22
Col11a1Q61245 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Gm27731-201ENSMUST00000185192 107 ntBASIC16.45■□□□□ 0.22
Col11a1Q61245 Gm45784-201ENSMUST00000188360 142 ntBASIC16.45■□□□□ 0.22
Col11a1Q61245 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 AC154806.6-201ENSMUST00000228192 202 ntBASIC16.45■□□□□ 0.22
Col11a1Q61245 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col11a1Q61245 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col11a1Q61245 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col11a1Q61245 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col11a1Q61245 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col11a1Q61245 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col11a1Q61245 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col11a1Q61245 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col11a1Q61245 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC16.44■□□□□ 0.22
Col11a1Q61245 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col11a1Q61245 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Col11a1Q61245 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC16.44■□□□□ 0.22
Col11a1Q61245 AC125117.1-201ENSMUST00000228121 468 ntBASIC16.44■□□□□ 0.22
Col11a1Q61245 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col11a1Q61245 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col11a1Q61245 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col11a1Q61245 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col11a1Q61245 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Col11a1Q61245 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC16.43■□□□□ 0.22
Col11a1Q61245 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC16.43■□□□□ 0.22
Col11a1Q61245 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Col11a1Q61245 Gm11661-201ENSMUST00000121761 1327 ntBASIC16.43■□□□□ 0.22
Col11a1Q61245 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col11a1Q61245 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col11a1Q61245 Gm11524-201ENSMUST00000119349 807 ntBASIC16.42■□□□□ 0.22
Col11a1Q61245 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC16.42■□□□□ 0.22
Col11a1Q61245 Gm6283-201ENSMUST00000182369 1000 ntBASIC16.42■□□□□ 0.22
Col11a1Q61245 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
Col11a1Q61245 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC16.42■□□□□ 0.22
Col11a1Q61245 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Col11a1Q61245 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Col11a1Q61245 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Col11a1Q61245 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Col11a1Q61245 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col11a1Q61245 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms