Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Mir8117-201ENSMUST00000184773 107 ntBASIC16■□□□□ 0.15
Upf3bQ3ULL6 Gm2272-201ENSMUST00000194903 582 ntBASIC16■□□□□ 0.15
Upf3bQ3ULL6 Gm44945-201ENSMUST00000206764 1187 ntBASIC16■□□□□ 0.15
Upf3bQ3ULL6 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Gm5177-201ENSMUST00000183092 997 ntBASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Gm8000-201ENSMUST00000188378 592 ntBASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Gm45683-201ENSMUST00000210825 1247 ntBASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 AC159295.1-201ENSMUST00000225326 940 ntBASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Mxra8os-201ENSMUST00000097740 687 ntBASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3bQ3ULL6 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Gm5264-201ENSMUST00000190584 848 ntBASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3bQ3ULL6 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Gm14494-201ENSMUST00000118786 435 ntBASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Mir3113-201ENSMUST00000175478 76 ntBASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Gm17968-201ENSMUST00000194902 784 ntBASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Thap2-203ENSMUST00000218989 527 ntBASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 AC154572.2-201ENSMUST00000225105 997 ntBASIC15.97■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms