Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC14.52□□□□□ -0.08
Col28a1Q2UY11 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col28a1Q2UY11 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col28a1Q2UY11 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col28a1Q2UY11 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Gm23547-201ENSMUST00000158210 271 ntBASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Col28a1Q2UY11 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col28a1Q2UY11 AC161829.1-201ENSMUST00000220298 281 ntBASIC14.52□□□□□ -0.09
Col28a1Q2UY11 AC159093.1-201ENSMUST00000227779 380 ntBASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Rps4l-201ENSMUST00000071745 943 ntBASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Gm21451-201ENSMUST00000111062 2775 ntBASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col28a1Q2UY11 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Gm8242-201ENSMUST00000193029 1420 ntBASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Gm37935-201ENSMUST00000192012 982 ntBASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Cmtm5-203ENSMUST00000227441 610 ntBASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Gm9856-201ENSMUST00000217077 2578 ntBASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Nupl1-207ENSMUST00000225311 2475 ntBASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col28a1Q2UY11 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm4609-201ENSMUST00000106443 1002 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm5138-201ENSMUST00000113842 1002 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm15191-201ENSMUST00000117933 1000 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm12182-201ENSMUST00000118655 1008 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm13882-201ENSMUST00000120886 1002 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm10284-201ENSMUST00000145057 1005 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 AC153794.1-201ENSMUST00000169148 126 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm10481-201ENSMUST00000179228 1002 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm2574-201ENSMUST00000181051 1002 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm3200-201ENSMUST00000181493 1002 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm8825-201ENSMUST00000182565 998 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm4518-201ENSMUST00000182638 718 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm8330-201ENSMUST00000182754 1008 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm4575-201ENSMUST00000182991 1002 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm8709-201ENSMUST00000183230 1012 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm10293-201ENSMUST00000076317 1002 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm6316-201ENSMUST00000082064 1020 ntBASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col28a1Q2UY11 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col28a1Q2UY11 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms