Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC14.6□□□□□ -0.07
Col9a1Q05722 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC14.6□□□□□ -0.07
Col9a1Q05722 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Col9a1Q05722 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Haglr-201ENSMUST00000100000 2085 ntBASIC14.59□□□□□ -0.07
Col9a1Q05722 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC14.59□□□□□ -0.07
Col9a1Q05722 Gm15074-201ENSMUST00000117603 936 ntBASIC14.59□□□□□ -0.07
Col9a1Q05722 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
Col9a1Q05722 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC14.59□□□□□ -0.07
Col9a1Q05722 Gm16505-201ENSMUST00000179981 232 ntBASIC14.59□□□□□ -0.07
Col9a1Q05722 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.59□□□□□ -0.07
Col9a1Q05722 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 1700029E06Rik-201ENSMUST00000189036 757 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC14.59□□□□□ -0.07
Col9a1Q05722 Olfr202-202ENSMUST00000201687 1232 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Col9a1Q05722 Gm40466-201ENSMUST00000212174 422 ntBASIC14.59□□□□□ -0.07
Col9a1Q05722 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 5930422O12Rik-201ENSMUST00000059351 840 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Col9a1Q05722 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Gm43338-201ENSMUST00000198617 2223 ntBASIC14.59□□□□□ -0.07
Col9a1Q05722 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Col9a1Q05722 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
Col9a1Q05722 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Col9a1Q05722 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col9a1Q05722 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
Col9a1Q05722 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col9a1Q05722 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col9a1Q05722 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Col9a1Q05722 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col9a1Q05722 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col9a1Q05722 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Col9a1Q05722 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
Col9a1Q05722 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
Col9a1Q05722 Gm5523-201ENSMUST00000180415 997 ntBASIC14.58□□□□□ -0.08
Col9a1Q05722 Gm26871-204ENSMUST00000181310 523 ntTSL 3 BASIC14.58□□□□□ -0.08
Col9a1Q05722 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC14.58□□□□□ -0.08
Col9a1Q05722 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC14.58□□□□□ -0.08
Col9a1Q05722 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC14.58□□□□□ -0.08
Col9a1Q05722 AC132881.2-201ENSMUST00000225474 709 ntBASIC14.58□□□□□ -0.08
Col9a1Q05722 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Gm5169-201ENSMUST00000096469 768 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Col9a1Q05722 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Col9a1Q05722 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Col9a1Q05722 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col9a1Q05722 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Col9a1Q05722 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Snord83b-201ENSMUST00000104546 94 ntBASIC14.57□□□□□ -0.08
Col9a1Q05722 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col9a1Q05722 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC14.57□□□□□ -0.08
Col9a1Q05722 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 62.4 ms