Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim39Q9ESN2 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC14.05□□□□□ -0.16
Trim39Q9ESN2 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Trim39Q9ESN2 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim39Q9ESN2 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim39Q9ESN2 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim39Q9ESN2 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim39Q9ESN2 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim39Q9ESN2 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC14.05□□□□□ -0.16
Trim39Q9ESN2 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim39Q9ESN2 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim39Q9ESN2 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 AC127302.2-201ENSMUST00000215212 268 ntBASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim39Q9ESN2 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 AC160338.1-201ENSMUST00000214232 705 ntBASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Gm18622-201ENSMUST00000219361 595 ntBASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
Trim39Q9ESN2 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim39Q9ESN2 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim39Q9ESN2 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Trim39Q9ESN2 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim39Q9ESN2 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Trim39Q9ESN2 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Trim39Q9ESN2 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim39Q9ESN2 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Trim39Q9ESN2 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms