Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm5138-201ENSMUST00000113842 1002 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm15191-201ENSMUST00000117933 1000 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm12182-201ENSMUST00000118655 1008 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm13882-201ENSMUST00000120886 1002 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm10284-201ENSMUST00000145057 1005 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm10481-201ENSMUST00000179228 1002 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm2574-201ENSMUST00000181051 1002 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm3200-201ENSMUST00000181493 1002 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm8825-201ENSMUST00000182565 998 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm4518-201ENSMUST00000182638 718 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm8330-201ENSMUST00000182754 1008 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm4575-201ENSMUST00000182991 1002 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm8709-201ENSMUST00000183230 1012 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm18669-201ENSMUST00000216049 778 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm10293-201ENSMUST00000076317 1002 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm6316-201ENSMUST00000082064 1020 ntBASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lima1Q9ERG0 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 AC148324.1-201ENSMUST00000219034 4240 ntBASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Gm21362-201ENSMUST00000194272 928 ntBASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lima1Q9ERG0 Carlr-201ENSMUST00000181515 2574 ntBASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Gm23547-201ENSMUST00000158210 271 ntBASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC14.8□□□□□ -0.04
Lima1Q9ERG0 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Lima1Q9ERG0 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Lima1Q9ERG0 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Lima1Q9ERG0 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Lima1Q9ERG0 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Lima1Q9ERG0 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Lima1Q9ERG0 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC14.79□□□□□ -0.04
Lima1Q9ERG0 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms